Result of FASTA (ccds) for
pF1KB8658
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8658, 520 aa
1>>>pF1KB8658 520 - 520 aa - 520 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.8208+/-0.00115; mu= -6.8819+/- 0.071
mean_var=524.7184+/-108.061, 0's: 0 Z-trim(116.7): 33 B-trim: 184 in 1/52
Lambda= 0.055990
statistics sampled from 17281 (17305) to 17281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.532), width: 16
Scan time: 3.370
The best scores are: opt bits E(32554)
CCDS47056.1 FIP1L1 gene_id:81608|Hs108|chr4 ( 520) 3565 302.3 8.5e-82
CCDS3491.1 FIP1L1 gene_id:81608|Hs108|chr4 ( 594) 2022 177.8 3.1e-44
CCDS47055.1 FIP1L1 gene_id:81608|Hs108|chr4 ( 588) 1548 139.5 1e-32
>>CCDS47056.1 FIP1L1 gene_id:81608|Hs108|chr4 (520 aa)
initn: 3565 init1: 3565 opt: 3565 Z-score: 1582.0 bits: 302.3 E(32554): 8.5e-82
Smith-Waterman score: 3565; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSLFKTGLPPSRRLPGAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSLFKTGLPPSRRLPGAI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 PSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHES
430 440 450 460 470 480
490 500 510 520
pF1KB8 EEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
::::::::::::::::::::::::::::::::::::::::
CCDS47 EEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
490 500 510 520
>>CCDS3491.1 FIP1L1 gene_id:81608|Hs108|chr4 (594 aa)
initn: 3140 init1: 2014 opt: 2022 Z-score: 907.7 bits: 177.8 E(32554): 3.1e-44
Smith-Waterman score: 3242; 89.3% identity (89.3% similar) in 551 aa overlap (29-520:44-594)
10 20 30 40 50
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGV
::::::::::::::::::::::::::::::
CCDS34 SGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIEDETAENGV
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB8 PKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTG
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB8 TKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
140 150 160 170 180 190
180 190 200 210
pF1KB8 RIRMGLEVIPVTSTTNKIT-----------------------VQQGRTGNSEKETALPST
::::::::::::::::::: ::::::::::::::::::
CCDS34 RIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKETALPST
200 210 220 230 240 250
220 230
pF1KB8 KAEFTSPPSLFKTGLPPSR------------------------------------RLPGA
::::::::::::::::::: :::::
CCDS34 KAEFTSPPSLFKTGLPPSRNSTSSQSQTSTASRKANSSVGKWQDRYGRAESPDLRRLPGA
260 270 280 290 300 310
240 250 260 270 280 290
pF1KB8 IDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPP
320 330 340 350 360 370
300 310 320 330 340 350
pF1KB8 FLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPH
380 390 400 410 420 430
360 370 380 390 400 410
pF1KB8 LPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSP
440 450 460 470 480 490
420 430 440 450 460 470
pF1KB8 TPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHE
500 510 520 530 540 550
480 490 500 510 520
pF1KB8 SEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
:::::::::::::::::::::::::::::::::::::::::
CCDS34 SEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
560 570 580 590
>>CCDS47055.1 FIP1L1 gene_id:81608|Hs108|chr4 (588 aa)
initn: 2793 init1: 1482 opt: 1548 Z-score: 700.8 bits: 139.5 E(32554): 1e-32
Smith-Waterman score: 3159; 87.7% identity (87.7% similar) in 552 aa overlap (37-520:37-588)
10 20 30 40 50 60
pF1KB8 ERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPKPKVTET
::::::::::::::::::::::::::::::
CCDS47 ERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPKPKVTET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTKVKGVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTKVKGVDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEV
130 140 150 160 170 180
190 200 210 220
pF1KB8 IPVTSTTNKIT-----------------------VQQGRTGNSEKETALPSTKAEFTSPP
::::::::::: ::::::::::::::::::::::::::
CCDS47 IPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKETALPSTKAEFTSPP
190 200 210 220 230 240
230 240
pF1KB8 SLFKTGLPPSR------------------------------------RLPGAIDVIGQTI
::::::::::: :::::::::::::
CCDS47 SLFKTGLPPSRNSTSSQSQTSTASRKANSSVGKWQDRYGRAESPDLRRLPGAIDVIGQTI
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB8 TISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTV
310 320 330 340 350 360
310 320 330 340 350
pF1KB8 STAPPLIPPPG---------FPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFP
::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS47 STAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFP
370 380 390 400 410 420
360 370 380 390 400 410
pF1KB8 HLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHS
430 440 450 460 470 480
420 430 440 450 460 470
pF1KB8 PTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRH
490 500 510 520 530 540
480 490 500 510 520
pF1KB8 ESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
::::::::::::::::::::::::::::::::::::::::::
CCDS47 ESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
550 560 570 580
520 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:15:08 2016 done: Fri Nov 4 14:15:08 2016
Total Scan time: 3.370 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]