Result of FASTA (omim) for
pF1KB8658
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8658, 520 aa
1>>>pF1KB8658 520 - 520 aa - 520 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.7681+/-0.000452; mu= -12.6302+/- 0.029
mean_var=572.8652+/-118.155, 0's: 0 Z-trim(124.8): 74 B-trim: 895 in 1/60
Lambda= 0.053586
statistics sampled from 47140 (47221) to 47140 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.554), width: 16
Scan time: 11.180
The best scores are: opt bits E(85289)
NP_001128410 (OMIM: 607686) pre-mRNA 3'-end-proces ( 520) 3565 290.1 1.1e-77
XP_005265839 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 535) 3380 275.8 2.2e-73
XP_016864158 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 529) 2496 207.5 8.1e-53
XP_005265838 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 544) 2311 193.2 1.7e-48
XP_016864154 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 558) 2292 191.8 4.7e-48
XP_016864157 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 543) 2290 191.6 5.1e-48
XP_016864160 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 499) 2044 172.5 2.6e-42
XP_016864151 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 579) 2022 170.9 9.2e-42
NP_112179 (OMIM: 607686) pre-mRNA 3'-end-processin ( 594) 2022 170.9 9.4e-42
XP_016864155 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 556) 2016 170.4 1.2e-41
XP_005265831 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 571) 2016 170.4 1.3e-41
XP_016864153 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 565) 1644 141.7 5.7e-33
XP_016864156 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 552) 1548 134.2 9.6e-31
XP_016864152 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 567) 1548 134.2 9.7e-31
XP_005265830 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 580) 1548 134.3 9.9e-31
NP_001128409 (OMIM: 607686) pre-mRNA 3'-end-proces ( 588) 1548 134.3 1e-30
XP_005265826 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 603) 1548 134.3 1e-30
XP_016864159 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 526) 1407 123.3 1.8e-27
XP_005265836 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 549) 1140 102.7 3e-21
XP_005265835 (OMIM: 607686) PREDICTED: pre-mRNA 3' ( 558) 1140 102.7 3e-21
>>NP_001128410 (OMIM: 607686) pre-mRNA 3'-end-processing (520 aa)
initn: 3565 init1: 3565 opt: 3565 Z-score: 1516.0 bits: 290.1 E(85289): 1.1e-77
Smith-Waterman score: 3565; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSLFKTGLPPSRRLPGAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSLFKTGLPPSRRLPGAI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 PSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHES
430 440 450 460 470 480
490 500 510 520
pF1KB8 EEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
::::::::::::::::::::::::::::::::::::::::
NP_001 EEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
490 500 510 520
>>XP_005265839 (OMIM: 607686) PREDICTED: pre-mRNA 3'-end (535 aa)
initn: 3380 init1: 3380 opt: 3380 Z-score: 1438.6 bits: 275.8 E(85289): 2.2e-73
Smith-Waterman score: 3525; 97.2% identity (97.2% similar) in 535 aa overlap (1-520:1-535)
10 20 30 40
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYG---------------DENEVERPEEENASANP
:::::::::::::::::::::::::::: :::::::::::::::::
XP_005 MSAGEVERLVSELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PSGIEDETAENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSGIEDETAENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 FKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPF
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB8 FPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSR
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB8 SARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRER
370 380 390 400 410 420
410 420 430 440 450 460
pF1KB8 ERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEET
430 440 450 460 470 480
470 480 490 500 510 520
pF1KB8 RHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
490 500 510 520 530
>>XP_016864158 (OMIM: 607686) PREDICTED: pre-mRNA 3'-end (529 aa)
initn: 3246 init1: 2168 opt: 2496 Z-score: 1069.3 bits: 207.5 E(85289): 8.1e-53
Smith-Waterman score: 3537; 98.3% identity (98.3% similar) in 529 aa overlap (1-520:1-529)
10 20 30 40 50 60
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSLFKTGLPPSRRLPGAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSLFKTGLPPSRRLPGAI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPF
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 LPPPPTVSTAPPLIPPPG---------FPPPPGAPPPSLIPTIESGHSSGYDSRSARAFP
:::::::::::::::::: :::::::::::::::::::::::::::::::::
XP_016 LPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFP
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB8 YGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRER
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB8 ERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSR
430 440 450 460 470 480
480 490 500 510 520
pF1KB8 SNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
490 500 510 520
>>XP_005265838 (OMIM: 607686) PREDICTED: pre-mRNA 3'-end (544 aa)
initn: 3061 init1: 1983 opt: 2311 Z-score: 991.8 bits: 193.2 E(85289): 1.7e-48
Smith-Waterman score: 3497; 95.6% identity (95.6% similar) in 544 aa overlap (1-520:1-544)
10 20 30 40
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYG---------------DENEVERPEEENASANP
:::::::::::::::::::::::::::: :::::::::::::::::
XP_005 MSAGEVERLVSELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PSGIEDETAENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSGIEDETAENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 FKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPF
250 260 270 280 290 300
290 300 310 320 330
pF1KB8 FPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPG---------FPPPPGAPPPSLIPTIES
::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_005 FPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIES
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB8 GHSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GHSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRE
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB8 RDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRE
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB8 RRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEA
490 500 510 520 530 540
520
pF1KB8 TPAE
::::
XP_005 TPAE
>>XP_016864154 (OMIM: 607686) PREDICTED: pre-mRNA 3'-end (558 aa)
initn: 2417 init1: 2245 opt: 2292 Z-score: 983.8 bits: 191.8 E(85289): 4.7e-48
Smith-Waterman score: 3433; 93.1% identity (93.1% similar) in 552 aa overlap (7-520:7-558)
10 20 30 40
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYG---------------DENEVERPEEENASANP
:::::::::::::::::::::: :::::::::::::::::
XP_016 MSAGEVERLVSELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PSGIEDETAENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSGIEDETAENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
130 140 150 160 170 180
170 180 190 200
pF1KB8 NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKIT-----------------------VQQGR
:::::::::::::::::::::::::::::::: :::::
XP_016 NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGR
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 TGNSEKETALPSTKAEFTSPPSLFKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGNSEKETALPSTKAEFTSPPSLFKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENS
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB8 NIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPP
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB8 PGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYAR
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB8 REKDRDRERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REKDRDRERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYE
430 440 450 460 470 480
450 460 470 480 490 500
pF1KB8 RHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKE
490 500 510 520 530 540
510 520
pF1KB8 AGSEPAPEQESTEATPAE
::::::::::::::::::
XP_016 AGSEPAPEQESTEATPAE
550
>>XP_016864157 (OMIM: 607686) PREDICTED: pre-mRNA 3'-end (543 aa)
initn: 2245 init1: 2245 opt: 2290 Z-score: 983.1 bits: 191.6 E(85289): 5.1e-48
Smith-Waterman score: 3509; 95.8% identity (95.8% similar) in 543 aa overlap (1-520:1-543)
10 20 30 40 50 60
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
130 140 150 160 170 180
190 200 210
pF1KB8 RMGLEVIPVTSTTNKIT-----------------------VQQGRTGNSEKETALPSTKA
::::::::::::::::: ::::::::::::::::::::
XP_016 RMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKETALPSTKA
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 EFTSPPSLFKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFTSPPSLFKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDN
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 NFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB8 HSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRER
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB8 DRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRER
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB8 RHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEAT
490 500 510 520 530 540
520
pF1KB8 PAE
:::
XP_016 PAE
>>XP_016864160 (OMIM: 607686) PREDICTED: pre-mRNA 3'-end (499 aa)
initn: 2352 init1: 1983 opt: 2044 Z-score: 880.7 bits: 172.5 E(85289): 2.6e-42
Smith-Waterman score: 2362; 85.1% identity (89.6% similar) in 424 aa overlap (1-400:1-419)
10 20 30 40
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYG---------------DENEVERPEEENASANP
:::::::::::::::::::::::::::: :::::::::::::::::
XP_016 MSAGEVERLVSELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 PSGIEDETAENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSGIEDETAENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 FKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPF
250 260 270 280 290 300
290 300 310 320 330
pF1KB8 FPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPG---------FPPPPGAPPPSLIPTIES
::::::::::::::::::::::::::::::::: ::::::::::::::::::
XP_016 FPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIES
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB8 GHSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRE
:::::::::::::::::: :. . .. ......: . ....: ... : :.
XP_016 GHSSGYDSRSARAFPYGN-AMKNDTDTGNMQKEVMSVTEQVE---KKKNDIEKD-DTGRK
370 380 390 400 410
400 410 420 430 440 450
pF1KB8 RDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRE
: :
XP_016 RKPDISLLEVIVDVAMKVKKEIVTGDTNTKNLKEAKKEKKRAVSLPLNRRAPKLHLQNRH
420 430 440 450 460 470
>>XP_016864151 (OMIM: 607686) PREDICTED: pre-mRNA 3'-end (579 aa)
initn: 3325 init1: 2014 opt: 2022 Z-score: 870.8 bits: 170.9 E(85289): 9.2e-42
Smith-Waterman score: 3250; 89.3% identity (89.3% similar) in 552 aa overlap (28-520:28-579)
10 20 30 40 50 60
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
:::::::::::::::::::::::::::::::::
XP_016 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
130 140 150 160 170 180
190 200 210
pF1KB8 RMGLEVIPVTSTTNKIT-----------------------VQQGRTGNSEKETALPSTKA
::::::::::::::::: ::::::::::::::::::::
XP_016 RMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKETALPSTKA
190 200 210 220 230 240
220 230 240
pF1KB8 EFTSPPSLFKTGLPPSR------------------------------------RLPGAID
::::::::::::::::: :::::::
XP_016 EFTSPPSLFKTGLPPSRNSTSSQSQTSTASRKANSSVGKWQDRYGRAESPDLRRLPGAID
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB8 VIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFL
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB8 PPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLP
370 380 390 400 410 420
370 380 390 400 410 420
pF1KB8 GSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPTP
430 440 450 460 470 480
430 440 450 460 470 480
pF1KB8 SVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESE
490 500 510 520 530 540
490 500 510 520
pF1KB8 EGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
:::::::::::::::::::::::::::::::::::::::
XP_016 EGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
550 560 570
>>NP_112179 (OMIM: 607686) pre-mRNA 3'-end-processing fa (594 aa)
initn: 3140 init1: 2014 opt: 2022 Z-score: 870.6 bits: 170.9 E(85289): 9.4e-42
Smith-Waterman score: 3242; 89.3% identity (89.3% similar) in 551 aa overlap (29-520:44-594)
10 20 30 40 50
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGV
::::::::::::::::::::::::::::::
NP_112 SGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPPSGIEDETAENGV
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB8 PKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 PKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTG
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB8 TKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 TKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
140 150 160 170 180 190
180 190 200 210
pF1KB8 RIRMGLEVIPVTSTTNKIT-----------------------VQQGRTGNSEKETALPST
::::::::::::::::::: ::::::::::::::::::
NP_112 RIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGRTGNSEKETALPST
200 210 220 230 240 250
220 230
pF1KB8 KAEFTSPPSLFKTGLPPSR------------------------------------RLPGA
::::::::::::::::::: :::::
NP_112 KAEFTSPPSLFKTGLPPSRNSTSSQSQTSTASRKANSSVGKWQDRYGRAESPDLRRLPGA
260 270 280 290 300 310
240 250 260 270 280 290
pF1KB8 IDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 IDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPP
320 330 340 350 360 370
300 310 320 330 340 350
pF1KB8 FLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 FLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPH
380 390 400 410 420 430
360 370 380 390 400 410
pF1KB8 LPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 LPGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSP
440 450 460 470 480 490
420 430 440 450 460 470
pF1KB8 TPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 TPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHE
500 510 520 530 540 550
480 490 500 510 520
pF1KB8 SEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
:::::::::::::::::::::::::::::::::::::::::
NP_112 SEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEATPAE
560 570 580 590
>>XP_016864155 (OMIM: 607686) PREDICTED: pre-mRNA 3'-end (556 aa)
initn: 2343 init1: 2014 opt: 2016 Z-score: 868.5 bits: 170.4 E(85289): 1.2e-41
Smith-Waterman score: 3458; 93.5% identity (93.5% similar) in 552 aa overlap (5-520:5-556)
10 20 30 40 50 60
pF1KB8 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSAGEVERLVSELSGGTGGDEEEEWLYGDENEVERPEEENASANPPSGIEDETAENGVPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLNIKTGGRVYGTTGTK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRI
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 RMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSLFKTGLPPSR------
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RMGLEVIPVTSTTNKITVQQGRTGNSEKETALPSTKAEFTSPPSLFKTGLPPSRNSTSSQ
190 200 210 220 230 240
240 250 260
pF1KB8 ------------------------------RLPGAIDVIGQTITISRVEGRRRANENSNI
::::::::::::::::::::::::::::::
XP_016 SQTSTASRKANSSVGKWQDRYGRAESPDLRRLPGAIDVIGQTITISRVEGRRRANENSNI
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB8 QVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QVLSERSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPG
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB8 APPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLPGSAPSWPSLVDTSKQWDYYARRE
370 380 390 400 410 420
390 400 410 420 430 440
pF1KB8 KDRDRERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KDRDRERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERH
430 440 450 460 470 480
450 460 470 480 490 500
pF1KB8 RASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAG
490 500 510 520 530 540
510 520
pF1KB8 SEPAPEQESTEATPAE
::::::::::::::::
XP_016 SEPAPEQESTEATPAE
550
520 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:15:09 2016 done: Fri Nov 4 14:15:10 2016
Total Scan time: 11.180 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]