FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8662, 377 aa
  1>>>pF1KB8662 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6544+/-0.00135; mu= 2.1064+/- 0.080
 mean_var=232.8846+/-47.090, 0's: 0 Z-trim(106.0): 56  B-trim: 68 in 1/51
 Lambda= 0.084043
 statistics sampled from 8713 (8737) to 8713 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.268), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS10795.1 CCDC113 gene_id:29070|Hs108|chr16      ( 377) 2370 300.7 1.4e-81
CCDS45497.1 CCDC113 gene_id:29070|Hs108|chr16      ( 323) 1537 199.7 3.1e-51


>>CCDS10795.1 CCDC113 gene_id:29070|Hs108|chr16           (377 aa)
 initn: 2370 init1: 2370 opt: 2370  Z-score: 1578.3  bits: 300.7 E(32554): 1.4e-81
Smith-Waterman score: 2370; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KB8 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 NAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
              310       320       330       340       350       360

              370       
pF1KB8 RMKITNEQLQADYLAGK
       :::::::::::::::::
CCDS10 RMKITNEQLQADYLAGK
              370       

>>CCDS45497.1 CCDC113 gene_id:29070|Hs108|chr16           (323 aa)
 initn: 1533 init1: 1533 opt: 1537  Z-score: 1033.3  bits: 199.7 E(32554): 3.1e-51
Smith-Waterman score: 1896; 85.7% identity (85.7% similar) in 377 aa overlap (1-377:1-323)

               10        20        30        40        50        60
pF1KB8 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRA
       ::::::::::::::::                                            
CCDS45 PPRLSEIKISAADYAQ--------------------------------------------
               70                                                  

              130       140       150       160       170       180
pF1KB8 NAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ----------AIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
                   80        90       100       110       120      

              190       200       210       220       230       240
pF1KB8 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
        130       140       150       160       170       180      

              250       260       270       280       290       300
pF1KB8 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
        190       200       210       220       230       240      

              310       320       330       340       350       360
pF1KB8 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
        250       260       270       280       290       300      

              370       
pF1KB8 RMKITNEQLQADYLAGK
       :::::::::::::::::
CCDS45 RMKITNEQLQADYLAGK
        310       320   




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:20:04 2016 done: Fri Nov  4 14:20:05 2016
 Total Scan time:  2.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]