Result of FASTA (omim) for
pF1KB8662
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8662, 377 aa
1>>>pF1KB8662 377 - 377 aa - 377 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4467+/-0.000623; mu= -8.3363+/- 0.038
mean_var=301.7505+/-62.813, 0's: 0 Z-trim(113.7): 90 B-trim: 1037 in 2/53
Lambda= 0.073833
statistics sampled from 23052 (23139) to 23052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.271), width: 16
Scan time: 7.940
The best scores are: opt bits E(85289)
NP_054876 (OMIM: 616070) coiled-coil domain-contai ( 377) 2370 266.6 6.9e-71
XP_011521340 (OMIM: 616070) PREDICTED: coiled-coil ( 350) 2161 244.3 3.3e-64
XP_011521341 (OMIM: 616070) PREDICTED: coiled-coil ( 332) 2093 237.0 4.8e-62
XP_011521343 (OMIM: 616070) PREDICTED: coiled-coil ( 332) 2093 237.0 4.8e-62
XP_011521342 (OMIM: 616070) PREDICTED: coiled-coil ( 332) 2093 237.0 4.8e-62
XP_016878665 (OMIM: 616070) PREDICTED: coiled-coil ( 332) 2093 237.0 4.8e-62
XP_011521344 (OMIM: 616070) PREDICTED: coiled-coil ( 310) 1856 211.8 1.8e-54
XP_016878666 (OMIM: 616070) PREDICTED: coiled-coil ( 289) 1807 206.5 6.3e-53
NP_001135774 (OMIM: 616070) coiled-coil domain-con ( 323) 1537 177.8 3.1e-44
XP_016878667 (OMIM: 616070) PREDICTED: coiled-coil ( 222) 1293 151.7 1.6e-36
>>NP_054876 (OMIM: 616070) coiled-coil domain-containing (377 aa)
initn: 2370 init1: 2370 opt: 2370 Z-score: 1393.6 bits: 266.6 E(85289): 6.9e-71
Smith-Waterman score: 2370; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)
10 20 30 40 50 60
pF1KB8 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 PPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 NAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
310 320 330 340 350 360
370
pF1KB8 RMKITNEQLQADYLAGK
:::::::::::::::::
NP_054 RMKITNEQLQADYLAGK
370
>>XP_011521340 (OMIM: 616070) PREDICTED: coiled-coil dom (350 aa)
initn: 2161 init1: 2161 opt: 2161 Z-score: 1273.8 bits: 244.3 E(85289): 3.3e-64
Smith-Waterman score: 2161; 100.0% identity (100.0% similar) in 344 aa overlap (34-377:7-350)
10 20 30 40 50 60
pF1KB8 DESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQRPPR
::::::::::::::::::::::::::::::
XP_011 MHYRRWSYVNSALKTETEMFEKYYAKLEPRDQRPPR
10 20 30
70 80 90 100 110 120
pF1KB8 LSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAE
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 RDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRD
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 NMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQEL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 TQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 AVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMK
280 290 300 310 320 330
370
pF1KB8 ITNEQLQADYLAGK
::::::::::::::
XP_011 ITNEQLQADYLAGK
340 350
>>XP_011521341 (OMIM: 616070) PREDICTED: coiled-coil dom (332 aa)
initn: 2093 init1: 2093 opt: 2093 Z-score: 1234.9 bits: 237.0 E(85289): 4.8e-62
Smith-Waterman score: 2093; 100.0% identity (100.0% similar) in 332 aa overlap (46-377:1-332)
20 30 40 50 60 70
pF1KB8 GSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQRPPRLSEIKISAADYA
::::::::::::::::::::::::::::::
XP_011 MFEKYYAKLEPRDQRPPRLSEIKISAADYA
10 20 30
80 90 100 110 120 130
pF1KB8 QFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 AEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 LKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 VLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAE
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 FRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLA
280 290 300 310 320 330
pF1KB8 GK
::
XP_011 GK
>>XP_011521343 (OMIM: 616070) PREDICTED: coiled-coil dom (332 aa)
initn: 2093 init1: 2093 opt: 2093 Z-score: 1234.9 bits: 237.0 E(85289): 4.8e-62
Smith-Waterman score: 2093; 100.0% identity (100.0% similar) in 332 aa overlap (46-377:1-332)
20 30 40 50 60 70
pF1KB8 GSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQRPPRLSEIKISAADYA
::::::::::::::::::::::::::::::
XP_011 MFEKYYAKLEPRDQRPPRLSEIKISAADYA
10 20 30
80 90 100 110 120 130
pF1KB8 QFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 AEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 LKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 VLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAE
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 FRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLA
280 290 300 310 320 330
pF1KB8 GK
::
XP_011 GK
>>XP_011521342 (OMIM: 616070) PREDICTED: coiled-coil dom (332 aa)
initn: 2093 init1: 2093 opt: 2093 Z-score: 1234.9 bits: 237.0 E(85289): 4.8e-62
Smith-Waterman score: 2093; 100.0% identity (100.0% similar) in 332 aa overlap (46-377:1-332)
20 30 40 50 60 70
pF1KB8 GSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQRPPRLSEIKISAADYA
::::::::::::::::::::::::::::::
XP_011 MFEKYYAKLEPRDQRPPRLSEIKISAADYA
10 20 30
80 90 100 110 120 130
pF1KB8 QFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 AEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 LKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 VLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAE
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 FRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLA
280 290 300 310 320 330
pF1KB8 GK
::
XP_011 GK
>>XP_016878665 (OMIM: 616070) PREDICTED: coiled-coil dom (332 aa)
initn: 2093 init1: 2093 opt: 2093 Z-score: 1234.9 bits: 237.0 E(85289): 4.8e-62
Smith-Waterman score: 2093; 100.0% identity (100.0% similar) in 332 aa overlap (46-377:1-332)
20 30 40 50 60 70
pF1KB8 GSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQRPPRLSEIKISAADYA
::::::::::::::::::::::::::::::
XP_016 MFEKYYAKLEPRDQRPPRLSEIKISAADYA
10 20 30
80 90 100 110 120 130
pF1KB8 QFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRANAERDLQHHEAIIEE
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 AEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNRRRDNMKEKLRLKNVS
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 LKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARNQELTQLKLSSGNTLQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 VLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRAKAEAVNKRLRKQLAE
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 FRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWNRMKITNEQLQADYLA
280 290 300 310 320 330
pF1KB8 GK
::
XP_016 GK
>>XP_011521344 (OMIM: 616070) PREDICTED: coiled-coil dom (310 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 1098.9 bits: 211.8 E(85289): 1.8e-54
Smith-Waterman score: 1856; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KB8 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEETVS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
XP_011 LYHSGWSAAS
310
>>XP_016878666 (OMIM: 616070) PREDICTED: coiled-coil dom (289 aa)
initn: 1807 init1: 1807 opt: 1807 Z-score: 1071.1 bits: 206.5 E(85289): 6.3e-53
Smith-Waterman score: 1807; 100.0% identity (100.0% similar) in 289 aa overlap (89-377:1-289)
60 70 80 90 100 110
pF1KB8 QRPPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHT
::::::::::::::::::::::::::::::
XP_016 MDRGVGLTADQKLELVQKEVADMKDDLRHT
10 20 30
120 130 140 150 160 170
pF1KB8 RANAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RANAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDM
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB8 NRRRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRRRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEA
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB8 RNQELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNQELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEED
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB8 RAKAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAKAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKA
220 230 240 250 260 270
360 370
pF1KB8 WNRMKITNEQLQADYLAGK
:::::::::::::::::::
XP_016 WNRMKITNEQLQADYLAGK
280
>>NP_001135774 (OMIM: 616070) coiled-coil domain-contain (323 aa)
initn: 1533 init1: 1533 opt: 1537 Z-score: 915.0 bits: 177.8 E(85289): 3.1e-44
Smith-Waterman score: 1896; 85.7% identity (85.7% similar) in 377 aa overlap (1-377:1-323)
10 20 30 40 50 60
pF1KB8 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTDDESESVLSDSHEGSELELPVIQLCGLVEELSYVNSALKTETEMFEKYYAKLEPRDQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHTRA
::::::::::::::::
NP_001 PPRLSEIKISAADYAQ--------------------------------------------
70
130 140 150 160 170 180
pF1KB8 NAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ----------AIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDMNR
80 90 100 110 120
190 200 210 220 230 240
pF1KB8 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEARN
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB8 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEEDRA
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB8 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKAWN
250 260 270 280 290 300
370
pF1KB8 RMKITNEQLQADYLAGK
:::::::::::::::::
NP_001 RMKITNEQLQADYLAGK
310 320
>>XP_016878667 (OMIM: 616070) PREDICTED: coiled-coil dom (222 aa)
initn: 1293 init1: 1293 opt: 1293 Z-score: 776.8 bits: 151.7 E(85289): 1.6e-36
Smith-Waterman score: 1293; 100.0% identity (100.0% similar) in 209 aa overlap (89-297:1-209)
60 70 80 90 100 110
pF1KB8 QRPPRLSEIKISAADYAQFRGRRRSKSRTGMDRGVGLTADQKLELVQKEVADMKDDLRHT
::::::::::::::::::::::::::::::
XP_016 MDRGVGLTADQKLELVQKEVADMKDDLRHT
10 20 30
120 130 140 150 160 170
pF1KB8 RANAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RANAERDLQHHEAIIEEAEIRWSEVSREVHEFEKDILKAISKKKGSILATQKVMKYIEDM
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB8 NRRRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRRRDNMKEKLRLKNVSLKVQRKKMLLQLRQKEEVSEALHDVDFQQLKIENAQFLETIEA
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB8 RNQELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNQELTQLKLSSGNTLQVLNAYKSKLHKAMEIYLNLDKEILLRKELLEKIEKETLQVEET
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB8 RAKAEAVNKRLRKQLAEFRAPQVMTYVREKILNADLEKSIRMWERKVEIAEMSLKGHRKA
XP_016 VSLYHSGWSAAS
220
377 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:20:05 2016 done: Fri Nov 4 14:20:06 2016
Total Scan time: 7.940 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]