FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8663, 558 aa
  1>>>pF1KB8663 558 - 558 aa - 558 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0542+/-0.00131; mu= -6.1824+/- 0.078
 mean_var=397.7619+/-79.919, 0's: 0 Z-trim(110.0): 110  B-trim: 10 in 1/51
 Lambda= 0.064308
 statistics sampled from 11178 (11256) to 11178 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.346), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS11255.1 NSRP1 gene_id:84081|Hs108|chr17        ( 558) 3688 356.9 3.8e-98
CCDS74025.1 NSRP1 gene_id:84081|Hs108|chr17        ( 504) 3335 324.1 2.6e-88


>>CCDS11255.1 NSRP1 gene_id:84081|Hs108|chr17             (558 aa)
 initn: 3688 init1: 3688 opt: 3688  Z-score: 1875.5  bits: 356.9 E(32554): 3.8e-98
Smith-Waterman score: 3688; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)

               10        20        30        40        50        60
pF1KB8 MAIPGRQYGLILPKKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAIPGRQYGLILPKKTQQLHPVLQKPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EIQKALAEDATVYEYDSIYDEMQKKKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RMEKKIQREREMEKGEFDDKEAFVTSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SGFYRHLLNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SGFYRHLLNQAVGEEEVPKCSFREARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EENPDADSDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EENPDADSDFDAKSSADDEIEETRVNCRREKVIETPENDFKHHRSQNHSRSPSEERGHST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 RHHTKGSRTSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RHHTKGSRTSRGHEKREDQHQQKQSRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 QEDKPRARDQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QEDKPRARDQRERSDRVWKREKDREKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 MKVRKERYENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKVRKERYENNDKYRDREKREVGVQSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 DKERNQEKPSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DKERNQEKPSNSESSLGAKHRLTEEGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYL
              490       500       510       520       530       540

              550        
pF1KB8 ARQMARVNAKTYIEKEDD
       ::::::::::::::::::
CCDS11 ARQMARVNAKTYIEKEDD
              550        

>>CCDS74025.1 NSRP1 gene_id:84081|Hs108|chr17             (504 aa)
 initn: 3335 init1: 3335 opt: 3335  Z-score: 1699.1  bits: 324.1 E(32554): 2.6e-88
Smith-Waterman score: 3335; 100.0% identity (100.0% similar) in 504 aa overlap (55-558:1-504)

           30        40        50        60        70        80    
pF1KB8 KPSVFGNDSDDDDETSVSESLQREAAKKQAMKQTKLEIQKALAEDATVYEYDSIYDEMQK
                                     ::::::::::::::::::::::::::::::
CCDS74                               MKQTKLEIQKALAEDATVYEYDSIYDEMQK
                                             10        20        30

           90       100       110       120       130       140    
pF1KB8 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KKEENNPKLLLGKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFV
               40        50        60        70        80        90

          150       160       170       180       190       200    
pF1KB8 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TSAYKKKLQERAEEEEREKRAAALEACLDVTKQKDLSGFYRHLLNQAVGEEEVPKCSFRE
              100       110       120       130       140       150

          210       220       230       240       250       260    
pF1KB8 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ARSGIKEEKSRGFSNEVSSKNRIPQEKCILQTDVKVEENPDADSDFDAKSSADDEIEETR
              160       170       180       190       200       210

          270       280       290       300       310       320    
pF1KB8 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VNCRREKVIETPENDFKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQ
              220       230       240       250       260       270

          330       340       350       360       370       380    
pF1KB8 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SRDQENHYTDRDYRKERDSHRHREASHRDSHWKRHEQEDKPRARDQRERSDRVWKREKDR
              280       290       300       310       320       330

          390       400       410       420       430       440    
pF1KB8 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EKYSQREQERDRQQNDQNRPSEKGEKEEKSKAKEEHMKVRKERYENNDKYRDREKREVGV
              340       350       360       370       380       390

          450       460       470       480       490       500    
pF1KB8 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QSSERNQDRKESSPNSRAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLTE
              400       410       420       430       440       450

          510       520       530       540       550        
pF1KB8 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EGQEKGKEQERPPEAVSKFAKRNNEETVMSARDRYLARQMARVNAKTYIEKEDD
              460       470       480       490       500    




558 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:20:44 2016 done: Fri Nov  4 14:20:44 2016
 Total Scan time:  3.530 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]