FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8667, 424 aa
  1>>>pF1KB8667 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7714+/-0.000801; mu= 14.4088+/- 0.048
 mean_var=64.6251+/-13.090, 0's: 0 Z-trim(106.3): 12  B-trim: 0 in 0/53
 Lambda= 0.159541
 statistics sampled from 8872 (8878) to 8872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.273), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS7875.2 ELP4 gene_id:26610|Hs108|chr11          ( 424) 2791 651.2 5.4e-187
CCDS73272.1 ELP4 gene_id:26610|Hs108|chr11         ( 535) 2496 583.3 1.8e-166
CCDS73271.1 ELP4 gene_id:26610|Hs108|chr11         ( 476) 2484 580.6 1.1e-165


>>CCDS7875.2 ELP4 gene_id:26610|Hs108|chr11               (424 aa)
 initn: 2791 init1: 2791 opt: 2791  Z-score: 3470.6  bits: 651.2 E(32554): 5.4e-187
Smith-Waterman score: 2791; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)

               10        20        30        40        50        60
pF1KB8 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK
              370       380       390       400       410       420

           
pF1KB8 HLDF
       ::::
CCDS78 HLDF
           

>>CCDS73272.1 ELP4 gene_id:26610|Hs108|chr11              (535 aa)
 initn: 2496 init1: 2496 opt: 2496  Z-score: 3102.0  bits: 583.3 E(32554): 1.8e-166
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)

               10        20        30        40        50        60
pF1KB8 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK
       :::::::::::::::::::::                                       
CCDS73 CDESDVKDLAFKLKRKLFTIEAGVQWHDLGSRQPRLLGSSNSPASASLVAGITGAHHHTQ
              370       380       390       400       410       420

>>CCDS73271.1 ELP4 gene_id:26610|Hs108|chr11              (476 aa)
 initn: 1401 init1: 1401 opt: 2484  Z-score: 3087.9  bits: 580.6 E(32554): 1.1e-165
Smith-Waterman score: 2484; 99.7% identity (99.7% similar) in 382 aa overlap (1-381:1-382)

               10        20        30        40        50        60
pF1KB8 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB8 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKME-IGPVSSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS73 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEQIGPVSSSR
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB8 FGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEG
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB8 FDGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FDGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSAC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB8 IITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNL
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB8 ICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGK
       ::::::::::::::::::::::                                      
CCDS73 ICDESDVKDLAFKLKRKLFTIEWVQDNYLRQERNIYPPGFSYLLKQKDSAWGEGSLQHST
              370       380       390       400       410       420




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:22:30 2016 done: Fri Nov  4 14:22:30 2016
 Total Scan time:  2.700 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]