FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8667, 424 aa
  1>>>pF1KB8667 424 - 424 aa - 424 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3241+/-0.000374; mu= 17.3700+/- 0.023
 mean_var=68.7391+/-14.299, 0's: 0 Z-trim(113.0): 12  B-trim: 721 in 1/54
 Lambda= 0.154694
 statistics sampled from 22070 (22082) to 22070 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.259), width:  16
 Scan time:  7.580

The best scores are:                                      opt bits E(85289)
NP_061913 (OMIM: 106210,606985,617141) elongator c ( 424) 2791 632.1 8.3e-181
NP_001275655 (OMIM: 106210,606985,617141) elongato ( 535) 2496 566.3 6.6e-161
NP_001275654 (OMIM: 106210,606985,617141) elongato ( 476) 2484 563.6 3.8e-160


>>NP_061913 (OMIM: 106210,606985,617141) elongator compl  (424 aa)
 initn: 2791 init1: 2791 opt: 2791  Z-score: 3367.1  bits: 632.1 E(85289): 8.3e-181
Smith-Waterman score: 2791; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:1-424)

               10        20        30        40        50        60
pF1KB8 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK
              370       380       390       400       410       420

           
pF1KB8 HLDF
       ::::
NP_061 HLDF
           

>>NP_001275655 (OMIM: 106210,606985,617141) elongator co  (535 aa)
 initn: 2496 init1: 2496 opt: 2496  Z-score: 3009.8  bits: 566.3 E(85289): 6.6e-161
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 381 aa overlap (1-381:1-381)

               10        20        30        40        50        60
pF1KB8 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 CDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKK
       :::::::::::::::::::::                                       
NP_001 CDESDVKDLAFKLKRKLFTIEAGVQWHDLGSRQPRLLGSSNSPASASLVAGITGAHHHTQ
              370       380       390       400       410       420

>>NP_001275654 (OMIM: 106210,606985,617141) elongator co  (476 aa)
 initn: 1401 init1: 1401 opt: 2484  Z-score: 2996.0  bits: 563.6 E(85289): 3.8e-160
Smith-Waterman score: 2484; 99.7% identity (99.7% similar) in 382 aa overlap (1-381:1-382)

               10        20        30        40        50        60
pF1KB8 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKE
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB8 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKME-IGPVSSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 DPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEQIGPVSSSR
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB8 FGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEG
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB8 FDGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSAC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB8 IITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNL
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB8 ICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGK
       ::::::::::::::::::::::                                      
NP_001 ICDESDVKDLAFKLKRKLFTIEWVQDNYLRQERNIYPPGFSYLLKQKDSAWGEGSLQHST
              370       380       390       400       410       420




424 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:22:30 2016 done: Fri Nov  4 14:22:31 2016
 Total Scan time:  7.580 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]