Result of FASTA (ccds) for
pF1KB8668
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8668, 463 aa
1>>>pF1KB8668 463 - 463 aa - 463 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7459+/-0.000846; mu= 14.9077+/- 0.051
mean_var=62.5924+/-12.489, 0's: 0 Z-trim(106.1): 28 B-trim: 419 in 1/52
Lambda= 0.162111
statistics sampled from 8772 (8794) to 8772 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.27), width: 16
Scan time: 2.400
The best scores are: opt bits E(32554)
CCDS2909.1 UBA3 gene_id:9039|Hs108|chr3 ( 463) 3097 733.0 1.5e-211
CCDS2910.1 UBA3 gene_id:9039|Hs108|chr3 ( 449) 2969 703.1 1.5e-202
CCDS12439.1 UBA2 gene_id:10054|Hs108|chr19 ( 640) 380 97.6 4e-20
CCDS2805.1 UBA7 gene_id:7318|Hs108|chr3 (1012) 364 93.9 8.2e-19
CCDS3516.1 UBA6 gene_id:55236|Hs108|chr4 (1052) 306 80.3 1e-14
>>CCDS2909.1 UBA3 gene_id:9039|Hs108|chr3 (463 aa)
initn: 3097 init1: 3097 opt: 3097 Z-score: 3911.3 bits: 733.0 E(32554): 1.5e-211
Smith-Waterman score: 3097; 99.6% identity (99.6% similar) in 463 aa overlap (1-463:1-463)
10 20 30 40 50 60
pF1KB8 MADGEEPEKKRRRIEELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MADGEEPEKKRRRIEELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GRPKAEVAAEFLNDRVPNCNVVPHFYKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS29 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLGGDDPEHIQWIFQKSLERASQYNIRGVTYR
:::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS29 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 KENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTS
370 380 390 400 410 420
430 440 450 460
pF1KB8 IEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
:::::::::::::::::::::::::::::::::::::::::::
CCDS29 IEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
430 440 450 460
>>CCDS2910.1 UBA3 gene_id:9039|Hs108|chr3 (449 aa)
initn: 2969 init1: 2969 opt: 2969 Z-score: 3749.8 bits: 703.1 E(32554): 1.5e-202
Smith-Waterman score: 2976; 96.5% identity (96.5% similar) in 463 aa overlap (1-463:1-449)
10 20 30 40 50 60
pF1KB8 MADGEEPEKKRRRIEELLAEKMAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPST
::::::: :::::::::::::::::::::::::::::::::::::::
CCDS29 MADGEEP--------------MAVDGGCGDTGDWEGRWNHVKKFLERSGPFTHPDFEPST
10 20 30 40
70 80 90 100 110 120
pF1KB8 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 GRPKAEVAAEFLNDRVPNCNVVPHFYKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS29 GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLGGDDPEHIQWIFQKSLERASQYNIRGVTYR
:::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS29 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYR
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAER
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB8 KENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTS
350 360 370 380 390 400
430 440 450 460
pF1KB8 IEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
:::::::::::::::::::::::::::::::::::::::::::
CCDS29 IEERTRPNLSKTLKELGLVDGQELAVADVTTPQTVLFKLHFTS
410 420 430 440
>>CCDS12439.1 UBA2 gene_id:10054|Hs108|chr19 (640 aa)
initn: 581 init1: 290 opt: 380 Z-score: 474.7 bits: 97.6 E(32554): 4e-20
Smith-Waterman score: 534; 41.9% identity (62.3% similar) in 236 aa overlap (71-302:19-239)
50 60 70 80 90 100
pF1KB8 VKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVID
.:::.::::.::::::::.:.:: .: .::
CCDS12 MALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLID
10 20 30 40
110 120 130 140 150
pF1KB8 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFYKIQ--DFNDTFYRQ
.::::::::::::::. : .:: ::.:: : . . :. :.: . .:. :.: :.::
CCDS12 LDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQ
50 60 70 80 90 100
160 170 180 190 200 210
pF1KB8 FHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMT
: ... .::. :: .: : .. : ::::..:: :. :.. .: :.:
CCDS12 FILVMNALDNRAARNHVNRMCLA----AD--------VPLIESGTAGYLGQVTTIKKGVT
110 120 130 140 150
220 230 240 250 260 270
pF1KB8 ACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML--QWPKEQPFGEGVPLGGDDPE
: :: . : : .:: ::: . : : ::: ....: : :. . : :::
CCDS12 ECYECHPK--PTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAY
: .. :: : : :..
CCDS12 -AAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLW
220 230 240 250 260 270
>>CCDS2805.1 UBA7 gene_id:7318|Hs108|chr3 (1012 aa)
initn: 249 init1: 188 opt: 364 Z-score: 451.2 bits: 93.9 E(32554): 8.2e-19
Smith-Waterman score: 367; 33.9% identity (57.3% similar) in 218 aa overlap (73-279:436-634)
50 60 70 80 90
pF1KB8 KFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQ-----IH
:..:::..:::::: .:: :. .
CCDS28 EDCALRGSRYDGQIAVFGAGFQEKLRRQHYLLVGAGAIGCELLKVFALVGLGAGNSGGLT
410 420 430 440 450 460
100 110 120 130 140 150
pF1KB8 VIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFYKIQD-----FN
:.::: :. :::.:::::: .:.::::::::: :. .:.: : .. ..
CCDS28 VVDMDHIERSNLSRQFLFRSQDVGRPKAEVAAAAARGLNPDLQVIPLTYPLDPTTEHIYG
470 480 490 500 510 520
160 170 180 190 200 210
pF1KB8 DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARV
:.:. . .. .:::. :::.. . :. ::...:: : :.: :
CCDS28 DNFFSRVDGVAAALDSFQARRYVAARCTHYLK------------PLLEAGTSGTWGSATV
530 540 550 560 570
220 230 240 250 260 270
pF1KB8 ILPGMTACIECTLELYPPQ-VNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLG
..: .: . . . .:.::. .: :: ::: ... : : :.
CCDS28 FMPHVTEAYRAPASAAASEDAPYPVCTVRYFPSTAEHT------LQWARHE-FEELFRLS
580 590 600 610 620
280 290 300 310 320 330
pF1KB8 GDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKI
.. .: :
CCDS28 AETINHHQQAHTSLADMDEPQTLTLLKPVLGVLRVRPQNWQDCVAWALGHWKLCFHYGIK
630 640 650 660 670 680
>>CCDS3516.1 UBA6 gene_id:55236|Hs108|chr4 (1052 aa)
initn: 460 init1: 139 opt: 306 Z-score: 377.6 bits: 80.3 E(32554): 1e-14
Smith-Waterman score: 372; 34.7% identity (61.8% similar) in 199 aa overlap (67-254:458-642)
40 50 60 70 80 90
pF1KB8 RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR--
:.. .....: :..:::.:::.:: :
CCDS35 LGKPECEEFLPRGDRYDALRACIGDTLCQKLQNLNIFLVGCGAIGCEMLKNFALLGVGTS
430 440 450 460 470 480
100 110 120 130 140 150
pF1KB8 ----QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFYKIQD
.: : : : :. :::::::::::. : .::. .::. . .. :. :.
CCDS35 KEKGMITVTDPDLIEKSNLNRQFLFRPHHIQKPKSYTAADATLKINSQIKIDAHLNKVCP
490 500 510 520 530 540
160 170 180 190 200
pF1KB8 -----FNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEG
.:: :: . .:. .::.. :::.... .. : ::.:.:: :
CCDS35 TTETIYNDEFYTKQDVIITALDNVEARRYVDSRCLANLR------------PLLDSGTMG
550 560 570 580 590
210 220 230 240 250 260
pF1KB8 FKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFG
::...::.: .: . . ::. ..:.::. :.: :: :...:
CCDS35 TKGHTEVIVPHLTESYNSHRD--PPEEEIPFCTLKSFPAAIEHTIQWARDKFESSFSHKP
600 610 620 630 640 650
270 280 290 300 310 320
pF1KB8 EGVPLGGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCA
CCDS35 SLFNKFWQTYSSAEEVLQKIQSGHSLEGCFQVIKLLSRRPRNWSQCVELARLKFEKYFNH
660 670 680 690 700 710
463 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:23:04 2016 done: Fri Nov 4 14:23:04 2016
Total Scan time: 2.400 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]