Result of FASTA (ccds) for
pF1KB8670
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8670, 464 aa
1>>>pF1KB8670 464 - 464 aa - 464 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3861+/-0.000763; mu= 18.0530+/- 0.046
mean_var=75.0508+/-15.392, 0's: 0 Z-trim(109.7): 39 B-trim: 394 in 2/49
Lambda= 0.148046
statistics sampled from 11036 (11074) to 11036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.34), width: 16
Scan time: 2.830
The best scores are: opt bits E(32554)
CCDS5577.1 RCC1L gene_id:81554|Hs108|chr7 ( 464) 3167 685.6 2.9e-197
CCDS64683.1 RCC1L gene_id:81554|Hs108|chr7 ( 454) 3006 651.2 6.3e-187
CCDS64684.1 RCC1L gene_id:81554|Hs108|chr7 ( 358) 2377 516.8 1.4e-146
CCDS82939.1 HERC3 gene_id:8916|Hs108|chr4 ( 368) 432 101.4 1.7e-21
CCDS34028.1 HERC3 gene_id:8916|Hs108|chr4 (1050) 432 101.7 3.9e-21
CCDS60541.1 HERC4 gene_id:26091|Hs108|chr10 ( 979) 401 95.1 3.6e-19
CCDS7274.1 HERC4 gene_id:26091|Hs108|chr10 (1049) 401 95.1 3.8e-19
CCDS41533.1 HERC4 gene_id:26091|Hs108|chr10 (1057) 401 95.1 3.8e-19
CCDS54777.1 HERC6 gene_id:55008|Hs108|chr4 ( 986) 397 94.2 6.6e-19
CCDS47098.1 HERC6 gene_id:55008|Hs108|chr4 (1022) 397 94.2 6.7e-19
CCDS73571.1 RCBTB2 gene_id:1102|Hs108|chr13 ( 527) 375 89.3 1e-17
CCDS9411.1 RCBTB2 gene_id:1102|Hs108|chr13 ( 551) 375 89.3 1.1e-17
CCDS73572.1 RCBTB2 gene_id:1102|Hs108|chr13 ( 556) 375 89.3 1.1e-17
CCDS3630.1 HERC5 gene_id:51191|Hs108|chr4 (1024) 326 79.0 2.5e-14
CCDS7828.1 SERGEF gene_id:26297|Hs108|chr11 ( 458) 303 73.9 3.9e-13
CCDS9418.1 RCBTB1 gene_id:55213|Hs108|chr13 ( 531) 299 73.1 8e-13
CCDS14246.1 RPGR gene_id:6103|Hs108|chrX ( 815) 276 68.3 3.4e-11
CCDS35229.1 RPGR gene_id:6103|Hs108|chrX (1152) 276 68.4 4.5e-11
>>CCDS5577.1 RCC1L gene_id:81554|Hs108|chr7 (464 aa)
initn: 3167 init1: 3167 opt: 3167 Z-score: 3655.1 bits: 685.6 E(32554): 2.9e-197
Smith-Waterman score: 3167; 99.6% identity (99.6% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KB8 MALVALVAGARLGRRLSGPGLGRGHWTAARRSRSRREAAEAEAEVPVVQYVGERAARADR
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS55 MALVALVAGARLGRRLSGPGLGRGHWTAAGRSRSRREAAEAEAEVPVVQYVGERAARADR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQD
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS55 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQVVQVACGQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
370 380 390 400 410 420
430 440 450 460
pF1KB8 NIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
430 440 450 460
>>CCDS64683.1 RCC1L gene_id:81554|Hs108|chr7 (454 aa)
initn: 3250 init1: 3006 opt: 3006 Z-score: 3469.4 bits: 651.2 E(32554): 6.3e-187
Smith-Waterman score: 3006; 98.9% identity (99.1% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB8 MALVALVAGARLGRRLSGPGLGRGHWTAARRSRSRREAAEAEAEVPVVQYVGERAARADR
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS64 MALVALVAGARLGRRLSGPGLGRGHWTAAGRSRSRREAAEAEAEVPVVQYVGERAARADR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQD
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS64 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQVVQVACGQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
370 380 390 400 410 420
430 440 450 460
pF1KB8 NIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
:::::::::::::::::::. :
CCDS64 NIRGCLGIGRLEDQYFPWRAPAPSASAKTTGPLL
430 440 450
>>CCDS64684.1 RCC1L gene_id:81554|Hs108|chr7 (358 aa)
initn: 2377 init1: 2377 opt: 2377 Z-score: 2744.8 bits: 516.8 E(32554): 1.4e-146
Smith-Waterman score: 2377; 99.4% identity (99.4% similar) in 352 aa overlap (1-352:1-352)
10 20 30 40 50 60
pF1KB8 MALVALVAGARLGRRLSGPGLGRGHWTAARRSRSRREAAEAEAEVPVVQYVGERAARADR
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS64 MALVALVAGARLGRRLSGPGLGRGHWTAAGRSRSRREAAEAEAEVPVVQYVGERAARADR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VFVWGFSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LSSKTADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQD
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS64 CGRAHSLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHRMQDFDGQVVQVACGQD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 HSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVW
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DGGLFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNDTWPQS
310 320 330 340 350
370 380 390 400 410 420
pF1KB8 GYGILGKGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGK
>>CCDS82939.1 HERC3 gene_id:8916|Hs108|chr4 (368 aa)
initn: 394 init1: 258 opt: 432 Z-score: 499.5 bits: 101.4 E(32554): 1.7e-21
Smith-Waterman score: 438; 31.2% identity (58.1% similar) in 308 aa overlap (158-462:22-312)
130 140 150 160 170 180
pF1KB8 VTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSL
: ::. .. :: : .:.:: ::.
CCDS82 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRS----VKEVACGGNHSV
10 20 30 40
190 200 210 220 230 240
pF1KB8 VLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFLTD
: . :.. : :. :: :.. :. ... .. : ....::::..::: :.:
CCDS82 FLLEDGEVYTCGLNTKGQLGHEREGNK----PEQIGALA--DQHIIHVACGESHSLALSD
50 60 70 80 90 100
250 260 270 280 290 300
pF1KB8 KGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGW
.:...: : :.::: :: . . . .: : ...::. . :::..::: .: :
CCDS82 RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTW
110 120 130 140 150 160
310 320 330 340 350 360
pF1KB8 GNSEYLQLASVTD-STQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILG
:.. . ::. . .:.. : . :. . :.: ::. .:. : :: ::.. :
CCDS82 GKNSHGQLGLGKEFPSQASPQRVRSLEGI-PLAQVAAGGAHSFALSLSGAVFGWGMNNAG
170 180 190 200 210 220
370 380 390 400 410 420
pF1KB8 KGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGKNIRGCL
. : : . : : . . .: : :: : :.::..: .:..: . : :
CCDS82 Q---LGLSDEKDRESPCHVKLLRTQ---KVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL
230 240 250 260 270
430 440 450 460
pF1KB8 GIGRLEDQYFPWRVT--MPGEPVDVACGVDHMVTLAKSFI
: ..:. : :: : .: ...::: .: .... :
CCDS82 GHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCN
280 290 300 310 320 330
CCDS82 VKCPSPVKGYWAAHSGQLSARAGKNDCLWNLKVF
340 350 360
>>CCDS34028.1 HERC3 gene_id:8916|Hs108|chr4 (1050 aa)
initn: 394 init1: 258 opt: 432 Z-score: 493.0 bits: 101.7 E(32554): 3.9e-21
Smith-Waterman score: 438; 31.2% identity (58.1% similar) in 308 aa overlap (158-462:22-312)
130 140 150 160 170 180
pF1KB8 VTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSL
: ::. .. :: : .:.:: ::.
CCDS34 MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRS----VKEVACGGNHSV
10 20 30 40
190 200 210 220 230 240
pF1KB8 VLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFLTD
: . :.. : :. :: :.. :. ... .. : ....::::..::: :.:
CCDS34 FLLEDGEVYTCGLNTKGQLGHEREGNK----PEQIGALA--DQHIIHVACGESHSLALSD
50 60 70 80 90 100
250 260 270 280 290 300
pF1KB8 KGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGW
.:...: : :.::: :: . . . .: : ...::. . :::..::: .: :
CCDS34 RGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTW
110 120 130 140 150 160
310 320 330 340 350 360
pF1KB8 GNSEYLQLASVTD-STQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILG
:.. . ::. . .:.. : . :. . :.: ::. .:. : :: ::.. :
CCDS34 GKNSHGQLGLGKEFPSQASPQRVRSLEGI-PLAQVAAGGAHSFALSLSGAVFGWGMNNAG
170 180 190 200 210 220
370 380 390 400 410 420
pF1KB8 KGPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGKNIRGCL
. : : . : : . . .: : :: : :.::..: .:..: . : :
CCDS34 Q---LGLSDEKDRESPCHVKLLRTQ---KVVYISCGEEHTAVLTKSGGVFTFGAGSCGQL
230 240 250 260 270
430 440 450 460
pF1KB8 GIGRLEDQYFPWRVT--MPGEPVDVACGVDHMVTLAKSFI
: ..:. : :: : .: ...::: .: .... :
CCDS34 GHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCN
280 290 300 310 320 330
CCDS34 VKCPSPVKGYWAAHSGQLSARADRFKYHIVKQIFSGGDQTFVLCSKYENYSPAVDFRTMN
340 350 360 370 380 390
>>CCDS60541.1 HERC4 gene_id:26091|Hs108|chr10 (979 aa)
initn: 418 init1: 226 opt: 401 Z-score: 457.6 bits: 95.1 E(32554): 3.6e-19
Smith-Waterman score: 464; 31.2% identity (57.9% similar) in 349 aa overlap (96-440:23-341)
70 80 90 100 110 120
pF1KB8 FSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTLLSSKT
..: . ..... ...:: :.. .
CCDS60 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVF---V
10 20 30 40
130 140 150 160 170 180
pF1KB8 ADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAH
: :. : : .::: ..::: .: : . :: . .. ::::.::
CCDS60 LDDGTVYTCGCNDLGQLGHEKSRK----------KPEQV-VALDAQN---IVAVSCGEAH
50 60 70 80 90
190 200 210 220 230 240
pF1KB8 SLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFL
.:.:.:. :.. : .: :: : : .: . .....:. :.:::::: ::: :
CCDS60 TLALNDKGQVYAWGLDSDGQLGL-VGSEECIRVPRNIKSLSDI--QIVQVACGYYHSLAL
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB8 TDKGEVYSCGWGAD--GQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGG
. .::. : :: . :: ::: .. .: .: :. .:::. : .... .:.
CCDS60 SKASEVF-C-WGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGA
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB8 LFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYG
.:::: ... ::. ..: .. :: :. :. :: :.:. :: ::..: :
CCDS60 IFGWGRNKFGQLG-LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAG
220 230 240 250 260
370 380 390 400 410 420
pF1KB8 ILGK-GPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALT-NKGELFVWGKN
:. : : :. :. : .: :. : :..: :: .: .:.. ..:... .: .
CCDS60 GYGQLGHN---STSHEINPRKVF---ELMGSI-VTEIACGRQHTSAFVPSSGRIYSFGLG
270 280 290 300 310 320
430 440 450 460
pF1KB8 IRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
: :: : .. :. :
CCDS60 GNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKRIFSGGDQSFSHYSSPQ
330 340 350 360 370 380
>>CCDS7274.1 HERC4 gene_id:26091|Hs108|chr10 (1049 aa)
initn: 418 init1: 226 opt: 401 Z-score: 457.2 bits: 95.1 E(32554): 3.8e-19
Smith-Waterman score: 464; 31.2% identity (57.9% similar) in 349 aa overlap (96-440:23-341)
70 80 90 100 110 120
pF1KB8 FSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTLLSSKT
..: . ..... ...:: :.. .
CCDS72 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVF---V
10 20 30 40
130 140 150 160 170 180
pF1KB8 ADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAH
: :. : : .::: ..::: .: : . :: . .. ::::.::
CCDS72 LDDGTVYTCGCNDLGQLGHEKSRK----------KPEQV-VALDAQN---IVAVSCGEAH
50 60 70 80 90
190 200 210 220 230 240
pF1KB8 SLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFL
.:.:.:. :.. : .: :: : : .: . .....:. :.:::::: ::: :
CCDS72 TLALNDKGQVYAWGLDSDGQLGL-VGSEECIRVPRNIKSLSDI--QIVQVACGYYHSLAL
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB8 TDKGEVYSCGWGAD--GQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGG
. .::. : :: . :: ::: .. .: .: :. .:::. : .... .:.
CCDS72 SKASEVF-C-WGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGA
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB8 LFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYG
.:::: ... ::. ..: .. :: :. :. :: :.:. :: ::..: :
CCDS72 IFGWGRNKFGQLG-LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAG
220 230 240 250 260
370 380 390 400 410 420
pF1KB8 ILGK-GPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALT-NKGELFVWGKN
:. : : :. :. : .: :. : :..: :: .: .:.. ..:... .: .
CCDS72 GYGQLGHN---STSHEINPRKVF---ELMGSI-VTEIACGRQHTSAFVPSSGRIYSFGLG
270 280 290 300 310 320
430 440 450 460
pF1KB8 IRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
: :: : .. :. :
CCDS72 GNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKRIFSGGDQSFSHYSSPQ
330 340 350 360 370 380
>>CCDS41533.1 HERC4 gene_id:26091|Hs108|chr10 (1057 aa)
initn: 418 init1: 226 opt: 401 Z-score: 457.2 bits: 95.1 E(32554): 3.8e-19
Smith-Waterman score: 464; 31.2% identity (57.9% similar) in 349 aa overlap (96-440:23-341)
70 80 90 100 110 120
pF1KB8 FSFSGALGVPSFVVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTLLSSKT
..: . ..... ...:: :.. .
CCDS41 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVF---V
10 20 30 40
130 140 150 160 170 180
pF1KB8 ADVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAH
: :. : : .::: ..::: .: : . :: . .. ::::.::
CCDS41 LDDGTVYTCGCNDLGQLGHEKSRK----------KPEQV-VALDAQN---IVAVSCGEAH
50 60 70 80 90
190 200 210 220 230 240
pF1KB8 SLVLTDREGVFSMGNNSYGQCGRKVVENEIYSESHRVHGMQDFDGQVVQVACGQDHSLFL
.:.:.:. :.. : .: :: : : .: . .....:. :.:::::: ::: :
CCDS41 TLALNDKGQVYAWGLDSDGQLGL-VGSEECIRVPRNIKSLSDI--QIVQVACGYYHSLAL
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB8 TDKGEVYSCGWGAD--GQTGLGHYNITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGG
. .::. : :: . :: ::: .. .: .: :. .:::. : .... .:.
CCDS41 SKASEVF-C-WGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGA
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB8 LFGWGNSEYLQLASVTDSTQVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYG
.:::: ... ::. ..: .. :: :. :. :: :.:. :: ::..: :
CCDS41 IFGWGRNKFGQLG-LNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAG
220 230 240 250 260
370 380 390 400 410 420
pF1KB8 ILGK-GPNLVESAVPEMIPPTLFGLTEFNPEIQVSRIRCGLSHFAALT-NKGELFVWGKN
:. : : :. :. : .: :. : :..: :: .: .:.. ..:... .: .
CCDS41 GYGQLGHN---STSHEINPRKVF---ELMGSI-VTEIACGRQHTSAFVPSSGRIYSFGLG
270 280 290 300 310 320
430 440 450 460
pF1KB8 IRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDHMVTLAKSFI
: :: : .. :. :
CCDS41 GNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDSEEYFCVKRIFSGGDQSFSHYSSPQ
330 340 350 360 370 380
>>CCDS54777.1 HERC6 gene_id:55008|Hs108|chr4 (986 aa)
initn: 296 init1: 211 opt: 397 Z-score: 453.0 bits: 94.2 E(32554): 6.6e-19
Smith-Waterman score: 397; 31.7% identity (57.2% similar) in 290 aa overlap (176-460:25-301)
150 160 170 180 190 200
pF1KB8 RSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQ
.::.. :. :::.: . :.: :.:: ::
CCDS54 MYFCWGADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQ
10 20 30 40 50
210 220 230 240 250 260
pF1KB8 CGRKVVENEIYSESHRVHGMQDFDGQVVQ-VACGQDHSLFLTDKGEVYSCGWGADGQTGL
::. .. : .: .. .:. :.::..::: . ::.:.. : :..:: :.
CCDS54 LGRRGAQRGELPEP-----IQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGI
60 70 80 90 100
270 280 290 300 310 320
pF1KB8 GHYN-ITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASVTD-ST
:... :. .: :. : ...:::. ::.: :. .:.::.. . ::. . .
CCDS54 GEFKEISFTPKKIM-TLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPS
110 120 130 140 150 160
330 340 350 360 370 380
pF1KB8 QVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILGKGPNLVESAVP-EMIP
:.. : . :. . :.: ::. .:. : : :: . :. : :: .
CCDS54 QASPQRVRSLEGI-PLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLA-LSGRNVPVQSNK
170 180 190 200 210 220
390 400 410 420 430 440
pF1KB8 PTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVT
: : . .. : : :: .: :.::. :..:..: : : :: . .. : :
CCDS54 PLSVGALK---NLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGPQLVE
230 240 250 260 270 280
450 460
pF1KB8 -MPGEPVDVACGVDHMVTLAKSFI
. : .. :: : :::
CCDS54 RIDGLVSQIDCGSYH--TLAYVHTTGQVVSFGHGPSDTSKPTHPEALTENFDISCLISAE
290 300 310 320 330 340
>>CCDS47098.1 HERC6 gene_id:55008|Hs108|chr4 (1022 aa)
initn: 296 init1: 211 opt: 397 Z-score: 452.7 bits: 94.2 E(32554): 6.7e-19
Smith-Waterman score: 397; 31.7% identity (57.2% similar) in 290 aa overlap (176-460:25-301)
150 160 170 180 190 200
pF1KB8 RSRKDKTRGYEYVLEPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQ
.::.. :. :::.: . :.: :.:: ::
CCDS47 MYFCWGADSRELQRRRTAGSPGAELLQAASGERHSLLLLTNHRVLSCGDNSRGQ
10 20 30 40 50
210 220 230 240 250 260
pF1KB8 CGRKVVENEIYSESHRVHGMQDFDGQVVQ-VACGQDHSLFLTDKGEVYSCGWGADGQTGL
::. .. : .: .. .:. :.::..::: . ::.:.. : :..:: :.
CCDS47 LGRRGAQRGELPEP-----IQALETLIVDLVSCGKEHSLAVCHKGRVFAWGAGSEGQLGI
60 70 80 90 100
270 280 290 300 310 320
pF1KB8 GHYN-ITSSPTKLGGDLAGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASVTD-ST
:... :. .: :. : ...:::. ::.: :. .:.::.. . ::. . .
CCDS47 GEFKEISFTPKKIM-TLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPS
110 120 130 140 150 160
330 340 350 360 370 380
pF1KB8 QVNVPRCLHFSGVGKVRQAACGGTGCAVLNGEGHVFVWGYGILGKGPNLVESAVP-EMIP
:.. : . :. . :.: ::. .:. : : :: . :. : :: .
CCDS47 QASPQRVRSLEGI-PLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLA-LSGRNVPVQSNK
170 180 190 200 210 220
390 400 410 420 430 440
pF1KB8 PTLFGLTEFNPEIQVSRIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVT
: : . .. : : :: .: :.::. :..:..: : : :: . .. : :
CCDS47 PLSVGALK---NLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQLGYSPTPEKRGPQLVE
230 240 250 260 270 280
450 460
pF1KB8 -MPGEPVDVACGVDHMVTLAKSFI
. : .. :: : :::
CCDS47 RIDGLVSQIDCGSYH--TLAYVHTTGQVVSFGHGPSDTSKPTHPEALTENFDISCLISAE
290 300 310 320 330 340
464 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:24:53 2016 done: Fri Nov 4 14:24:53 2016
Total Scan time: 2.830 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]