FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8672, 571 aa
  1>>>pF1KB8672 571 - 571 aa - 571 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4001+/-0.0011; mu= 17.8229+/- 0.066
 mean_var=60.1868+/-12.095, 0's: 0 Z-trim(102.1): 33  B-trim: 0 in 0/48
 Lambda= 0.165319
 statistics sampled from 6793 (6801) to 6793 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.554), E-opt: 0.2 (0.209), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS2299.1 SLC40A1 gene_id:30061|Hs108|chr2        ( 571) 3724 897.2       0


>>CCDS2299.1 SLC40A1 gene_id:30061|Hs108|chr2             (571 aa)
 initn: 3724 init1: 3724 opt: 3724  Z-score: 4795.3  bits: 897.2 E(32554):    0
Smith-Waterman score: 3724; 100.0% identity (100.0% similar) in 571 aa overlap (1-571:1-571)

               10        20        30        40        50        60
pF1KB8 MTRAGDHNRQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MTRAGDHNRQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 EEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TKIPEITTEIYMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TKIPEITTEIYMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 QENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFR
              490       500       510       520       530       540

              550       560       570 
pF1KB8 FAQNTLGNKLFACGPDAKEVRKENQANTSVV
       :::::::::::::::::::::::::::::::
CCDS22 FAQNTLGNKLFACGPDAKEVRKENQANTSVV
              550       560       570 




571 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:26:09 2016 done: Fri Nov  4 14:26:09 2016
 Total Scan time:  2.750 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]