FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8677, 368 aa
  1>>>pF1KB8677 368 - 368 aa - 368 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2730+/-0.000765; mu= 16.5949+/- 0.046
 mean_var=62.4274+/-12.722, 0's: 0 Z-trim(107.8): 9  B-trim: 0 in 0/51
 Lambda= 0.162325
 statistics sampled from 9773 (9780) to 9773 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.3), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS74018.1 POLDIP2 gene_id:26073|Hs108|chr17      ( 368) 2540 603.3 1.1e-172
CCDS76978.1 POLDIP2 gene_id:26073|Hs108|chr17      ( 350) 1864 444.9 4.8e-125


>>CCDS74018.1 POLDIP2 gene_id:26073|Hs108|chr17           (368 aa)
 initn: 2540 init1: 2540 opt: 2540  Z-score: 3213.7  bits: 603.3 E(32554): 1.1e-172
Smith-Waterman score: 2540; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB8 MAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VLETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VLETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHED
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 VVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDEK
              310       320       330       340       350       360

               
pF1KB8 TPPSGLHW
       ::::::::
CCDS74 TPPSGLHW
               

>>CCDS76978.1 POLDIP2 gene_id:26073|Hs108|chr17           (350 aa)
 initn: 1864 init1: 1864 opt: 1864  Z-score: 2358.4  bits: 444.9 E(32554): 4.8e-125
Smith-Waterman score: 2362; 95.1% identity (95.1% similar) in 368 aa overlap (1-368:1-350)

               10        20        30        40        50        60
pF1KB8 MAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VLETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEKAENPAG
       :::::::::::::::::::::                  :::::::::::::::::::::
CCDS76 VLETVGVFEVPKQNGKYETGQ------------------ARLYDRDVASAAPEKAENPAG
               70        80                          90       100  

              130       140       150       160       170       180
pF1KB8 HGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HGSKEVKGKTHTYYQVLIDARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHED
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KB8 ILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTEN
            170       180       190       200       210       220  

              250       260       270       280       290       300
pF1KB8 IRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 IRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRG
            230       240       250       260       270       280  

              310       320       330       340       350       360
pF1KB8 VVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDEK
            290       300       310       320       330       340  

               
pF1KB8 TPPSGLHW
       ::::::::
CCDS76 TPPSGLHW
            350




368 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:30:07 2016 done: Fri Nov  4 14:30:07 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]