FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8679, 514 aa
  1>>>pF1KB8679 514 - 514 aa - 514 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9330+/-0.00101; mu= 10.9477+/- 0.061
 mean_var=111.5833+/-21.760, 0's: 0 Z-trim(107.6): 26  B-trim: 98 in 1/49
 Lambda= 0.121416
 statistics sampled from 9643 (9655) to 9643 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.297), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS14761.1 DKC1 gene_id:1736|Hs108|chrX           ( 514) 3338 595.8 3.8e-170
CCDS76062.1 DKC1 gene_id:1736|Hs108|chrX           ( 420) 2764 495.2 5.9e-140


>>CCDS14761.1 DKC1 gene_id:1736|Hs108|chrX                (514 aa)
 initn: 3338 init1: 3338 opt: 3338  Z-score: 3168.1  bits: 595.8 E(32554): 3.8e-170
Smith-Waterman score: 3338; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB8 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK
              430       440       450       460       470       480

              490       500       510    
pF1KB8 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
       ::::::::::::::::::::::::::::::::::
CCDS14 AGLESGAEPGDGDSDTTKKKKKKKKAKEVELVSE
              490       500       510    

>>CCDS76062.1 DKC1 gene_id:1736|Hs108|chrX                (420 aa)
 initn: 2764 init1: 2764 opt: 2764  Z-score: 2626.1  bits: 495.2 E(32554): 5.9e-140
Smith-Waterman score: 2764; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB8 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MADAEVIILPKKHKKKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KLNVRTTHYTPLACGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SGTLDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FQRPPLIAAVKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GQMQELRRVRSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS76 GIVAKIKRVIMERDTYPRKWGLGPKASQKKLMIKQGLLDKHGKPTDSTPATWKQEYVDYR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 ESAKKEVVAEVVKAPQVVAEAAKTAKRKRESESESDETPPAAPQLIKKEKKKSKKDKKAK




514 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:54:11 2016 done: Sat Nov  5 21:54:12 2016
 Total Scan time:  3.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]