FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8683, 672 aa
  1>>>pF1KB8683 672 - 672 aa - 672 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8304+/-0.00115; mu= 7.9300+/- 0.069
 mean_var=133.1748+/-26.898, 0's: 0 Z-trim(106.3): 30  B-trim: 0 in 0/51
 Lambda= 0.111138
 statistics sampled from 8858 (8878) to 8858 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.273), width:  16
 Scan time:  3.800

The best scores are:                                      opt bits E(32554)
CCDS74063.1 TTC25 gene_id:83538|Hs108|chr17        ( 672) 4393 716.4 3.2e-206


>>CCDS74063.1 TTC25 gene_id:83538|Hs108|chr17             (672 aa)
 initn: 4393 init1: 4393 opt: 4393  Z-score: 3815.8  bits: 716.4 E(32554): 3.2e-206
Smith-Waterman score: 4393; 100.0% identity (100.0% similar) in 672 aa overlap (1-672:1-672)

               10        20        30        40        50        60
pF1KB8 MSDPEGETLRSTFPSYMAEGERLYLCGEFSKAAQSFSNALYLQDGDKNCLVARSKCFLKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MSDPEGETLRSTFPSYMAEGERLYLCGEFSKAAQSFSNALYLQDGDKNCLVARSKCFLKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GDLERSLKDAEASLQSDPAFCKGILQKAETLYTMGDFEFALVFYHRGYKLRPDREFRVGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GDLERSLKDAEASLQSDPAFCKGILQKAETLYTMGDFEFALVFYHRGYKLRPDREFRVGI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QKAQEAINNSVGSPSSIKLENKGDLSFLSKQAENIKAQQKPQPMKHLLHPTKGEPKWKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QKAQEAINNSVGSPSSIKLENKGDLSFLSKQAENIKAQQKPQPMKHLLHPTKGEPKWKAS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LKSEKTVRQLLGELYVDKEYLEKLLLDEDLIKGTMKGGLTVEDLIMTGINYLDTHSNFWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LKSEKTVRQLLGELYVDKEYLEKLLLDEDLIKGTMKGGLTVEDLIMTGINYLDTHSNFWR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 QQKPIYARERDRKLMQEKWLRDHKRRPSQTAHYILKSLEDIDMLLTSGSAEGSLQKAEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 QQKPIYARERDRKLMQEKWLRDHKRRPSQTAHYILKSLEDIDMLLTSGSAEGSLQKAEKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LKKVLEWNKEEVPNKDELVGNLYSCIGNAQIELGQMEAALQSHRKDLEIAKEYDLPDAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LKKVLEWNKEEVPNKDELVGNLYSCIGNAQIELGQMEAALQSHRKDLEIAKEYDLPDAKS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 RALDNIGRVFARVGKFQQAIDTWEEKIPLAKTTLEKTWLFHEIGRCYLELDQAWQAQNYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RALDNIGRVFARVGKFQQAIDTWEEKIPLAKTTLEKTWLFHEIGRCYLELDQAWQAQNYG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EKSQQCAEEEGDIEWQLNASVLVAQAQVKLRDFESAVNNFEKALERAKLVHNNEAQQAII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EKSQQCAEEEGDIEWQLNASVLVAQAQVKLRDFESAVNNFEKALERAKLVHNNEAQQAII
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 SALDDANKGIIRELRKTNYVENLKEKSEGEASLYEDRIITREKDMRRVRDEPEKVVKQWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SALDDANKGIIRELRKTNYVENLKEKSEGEASLYEDRIITREKDMRRVRDEPEKVVKQWD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 HSEDEKETDEDDEAFGEALQSPASGKQSVEAGKARSDLGAVAKGLSGELGTRSGETGRKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 HSEDEKETDEDDEAFGEALQSPASGKQSVEAGKARSDLGAVAKGLSGELGTRSGETGRKL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 LEAGRRESREIYRRPSGELEQRLSGEFSRQEPEELKKLSEVGRREPEELGKTQFGEIGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LEAGRRESREIYRRPSGELEQRLSGEFSRQEPEELKKLSEVGRREPEELGKTQFGEIGET
              610       620       630       640       650       660

              670  
pF1KB8 KKTGNEMEKEYE
       ::::::::::::
CCDS74 KKTGNEMEKEYE
              670  




672 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:33:06 2016 done: Fri Nov  4 14:33:07 2016
 Total Scan time:  3.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]