FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8684, 379 aa
  1>>>pF1KB8684 379 - 379 aa - 379 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7357+/-0.00105; mu= -0.5233+/- 0.063
 mean_var=293.5133+/-59.741, 0's: 0 Z-trim(112.4): 5  B-trim: 8 in 1/54
 Lambda= 0.074862
 statistics sampled from 13133 (13136) to 13133 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.404), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS3374.1 LYAR gene_id:55646|Hs108|chr4           ( 379) 2536 287.0 1.9e-77


>>CCDS3374.1 LYAR gene_id:55646|Hs108|chr4                (379 aa)
 initn: 2536 init1: 2536 opt: 2536  Z-score: 1503.9  bits: 287.0 E(32554): 1.9e-77
Smith-Waterman score: 2536; 100.0% identity (100.0% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KB8 MVFFTCNACGESVKKIQVEKHVSVCRNCECLSCIDCGKDFWGDDYKNHVKCISEDQKYGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVFFTCNACGESVKKIQVEKHVSVCRNCECLSCIDCGKDFWGDDYKNHVKCISEDQKYGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KGYEGKTHKGDIKQQAWIQKISELIKRPNVSPKVRELLEQISAFDNVPRKKAKFQNWMKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KGYEGKTHKGDIKQQAWIQKISELIKRPNVSPKVRELLEQISAFDNVPRKKAKFQNWMKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SLKVHNESILDQVWNIFSEASNSEPVNKEQDQRPLHPVANPHAEISTKVPASKVKDAVEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SLKVHNESILDQVWNIFSEASNSEPVNKEQDQRPLHPVANPHAEISTKVPASKVKDAVEQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QGEVKKNKRERKEERQKKRKREKKELKLENHQENSRNQKPKKRKKGQEADLEAGGEEVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QGEVKKNKRERKEERQKKRKREKKELKLENHQENSRNQKPKKRKKGQEADLEAGGEEVPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ANGSAGKRSKKKKQRKDSASEEEARVGAGKRKRRHSEVETDSKKKKMKLPEHPEGGEPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ANGSAGKRSKKKKQRKDSASEEEARVGAGKRKRRHSEVETDSKKKKMKLPEHPEGGEPED
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 DEAPAKGKFNWKGTIKAILKQAPDNEITIKKLRKKVLAQYYTVTDEHHRSEEELLVIFNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DEAPAKGKFNWKGTIKAILKQAPDNEITIKKLRKKVLAQYYTVTDEHHRSEEELLVIFNK
              310       320       330       340       350       360

              370         
pF1KB8 KISKNPTFKLLKDKVKLVK
       :::::::::::::::::::
CCDS33 KISKNPTFKLLKDKVKLVK
              370         




379 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:33:44 2016 done: Fri Nov  4 14:33:45 2016
 Total Scan time:  2.670 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]