Result of FASTA (ccds) for
pF1KB8685
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8685, 717 aa
1>>>pF1KB8685 717 - 717 aa - 717 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5102+/-0.00078; mu= 10.9514+/- 0.048
mean_var=138.2350+/-26.665, 0's: 0 Z-trim(113.1): 10 B-trim: 0 in 0/51
Lambda= 0.109085
statistics sampled from 13785 (13795) to 13785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.424), width: 16
Scan time: 3.290
The best scores are: opt bits E(32554)
CCDS12675.1 RSPH6A gene_id:81492|Hs108|chr19 ( 717) 4891 781.3 0
CCDS34521.1 RSPH4A gene_id:345895|Hs108|chr6 ( 716) 1978 322.8 1.1e-87
CCDS55051.1 RSPH4A gene_id:345895|Hs108|chr6 ( 600) 1245 207.4 5e-53
>>CCDS12675.1 RSPH6A gene_id:81492|Hs108|chr19 (717 aa)
initn: 4891 init1: 4891 opt: 4891 Z-score: 4165.3 bits: 781.3 E(32554): 0
Smith-Waterman score: 4891; 100.0% identity (100.0% similar) in 717 aa overlap (1-717:1-717)
10 20 30 40 50 60
pF1KB8 MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALAADPEERQQIPPDAQRNAPGWSQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALAADPEERQQIPPDAQRNAPGWSQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFPSEFQPQPYSDESRMQVAELTTSLML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFPSEFQPQPYSDESRMQVAELTTSLML
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTDQFSEGAQHGPYIRDDPALQFLPSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTDQFSEGAQHGPYIRDDPALQFLPSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDLSLYEHLVNLLTKILNQRPEDPLSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDLSLYEHLVNLLTKILNQRPEDPLSVL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQKALFTRSGGGTEGEQEMEEEVGETP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQKALFTRSGGGTEGEQEMEEEVGETP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 VPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLVEQQPIHTCRFWGKILGIKRSYLVAEV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 EFREGEEEAEEEEVEEMTEGGEVMEAHGEEEGEEDEEKAVDIVPKSVWKPPPVIPKEESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EFREGEEEAEEEEVEEMTEGGEVMEAHGEEEGEEDEEKAVDIVPKSVWKPPPVIPKEESR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 SGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGANKYLYFVCNEPGLPWTRLPHVTPAQIVNARKIKKFFTGYLDTPVVSYPPFPGNEANY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 LRAQIARISAATQVSPLGFYQFSEEEGDEEEEGGAGRDSYEENPDFEGIPVLELVDSMAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRAQIARISAATQVSPLGFYQFSEEEGDEEEEGGAGRDSYEENPDFEGIPVLELVDSMAN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 WVHHTQHILPQGRCTWVNPLQKTEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WVHHTQHILPQGRCTWVNPLQKTEEEEDLGEEEEKADEGPEEVEQEVGPPLLTPLSEDAE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 IMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGAYAYASGKKFENIYIGWGHKYSPESFNPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGAYAYASGKKFENIYIGWGHKYSPESFNPA
610 620 630 640 650 660
670 680 690 700 710
pF1KB8 LPAPIQQEYPSGPEIMEMSDPTVEEEQALKAAQEQALGATEEEEEGEEEEEGEETDD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LPAPIQQEYPSGPEIMEMSDPTVEEEQALKAAQEQALGATEEEEEGEEEEEGEETDD
670 680 690 700 710
>>CCDS34521.1 RSPH4A gene_id:345895|Hs108|chr6 (716 aa)
initn: 1905 init1: 914 opt: 1978 Z-score: 1687.7 bits: 322.8 E(32554): 1.1e-87
Smith-Waterman score: 2305; 51.5% identity (76.5% similar) in 714 aa overlap (8-716:42-716)
10 20 30
pF1KB8 MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALA
: . : : : :..:. ...:..
CCDS34 ENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSPQSRAKTPL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB8 ADPE--ERQQIPPDAQRNAPGWSQRGSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFP
. : : .. : . :. :. : ...: : :.. : .. : ..: .:
CCDS34 GGPAGPETSSPAPVSPRE-PSSSPSPLAPARQDLAAPP--QSD--RTTSV-IPEAGTPYP
80 90 100 110 120
100 110 120 130 140 150
pF1KB8 SEFQPQPYSDESRMQVAELTTSLMLQRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTD
. .. . . :: . . . . .:. :: . : . : .... . : .:...: .
CCDS34 DPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKEL-RFDVFQEE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 QFSEGAQHGPYIRDDPALQFLPSELGFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDL
. ... : ..:: :. ...: : ::...::::::::.:: : .
CCDS34 D-----SNSDYDLQQPA----PG-------GSEVA-PSMLEITIQNAKAYLLKTSSNSGF
190 200 210 220
220 230 240 250 260 270
pF1KB8 SLYEHLVNLLTKILNQRPEDPLSVLESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQ
.::.:: :.::::::.:::. ....:.... .. : :.:.:... :. :::..::::
CCDS34 NLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQ
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB8 KALFTRSGGGTEG-EQEMEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLV
:::: . : :: .::.:.:..:. .::.::.:::::::::::..::..:::::.:::.
CCDS34 KALFLQ--GHLEGVDQELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLT
290 300 310 320 330 340
340 350 360 370 380 390
pF1KB8 EQQPIHTCRFWGKILGIKRSYLVAEVEFREGE--EEAEEEEVEEMTEGGEVMEAHGEEEG
. .::. :::::::::.. .:.:::::::::: ::.:::.: : ..:: ::: :
CCDS34 DTHPIQRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGES-EAH---ED
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB8 EEDEEKAVDIVPKSVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNA
:::: .::: .: : .:::::::.:::::.:::::::: ::..:: : ::::: :
CCDS34 EEDE------LPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIA
410 420 430 440 450
460 470 480 490 500 510
pF1KB8 RKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSEEEGDEEEE
::::::::: ::.:..:::::::::.::::::::::::.:.:::::::::.::::.::::
CCDS34 RKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEE
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB8 GGAGRDSYEENPDFEGIPVLELVDSMANWVHHTQHILPQGRCTWVNPLQKTEEEEDLGEE
. .::.:.::::::::: :..::.:..:::::.:::: ::::.: : .::.::::. ::
CCDS34 AEGGRNSFEENPDFEGIQVIDLVESLSNWVHHVQHILSQGRCNWFNSIQKNEEEEE--EE
520 530 540 550 560 570
580 590 600 610 620 630
pF1KB8 EEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGA
.:. :.. . .::::: :::::.::: ::... ::::::: .: :::..::..:::::::
CCDS34 DEEKDDS-DYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGA
580 590 600 610 620 630
640 650 660 670 680 690
pF1KB8 YAYASGKKFENIYIGWGHKYSPESFNPALPAPIQQEYPSGPEIMEMSDPTVEEEQALKAA
::...::::::.::::::::::....: .: :. ::::::::: ::.::.::::::..::
CCDS34 YAFSNGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAA
640 650 660 670 680 690
700 710
pF1KB8 QEQALGATEEEEEGEEEEEGEETDD
:: .: :.:.:: :.:.: .. :
CCDS34 QEAVLLAAENEESEEDEDEEDDYD
700 710
>>CCDS55051.1 RSPH4A gene_id:345895|Hs108|chr6 (600 aa)
initn: 1504 init1: 810 opt: 1245 Z-score: 1065.4 bits: 207.4 E(32554): 5e-53
Smith-Waterman score: 1572; 48.5% identity (73.2% similar) in 549 aa overlap (8-551:42-554)
10 20 30
pF1KB8 MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALA
: . : : : :..:. ...:..
CCDS55 ENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSPQSRAKTPL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB8 ADPE--ERQQIPPDAQRNAPGWSQRGSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFP
. : : .. : . :. :. : ...: : :.. : .. : ..: .:
CCDS55 GGPAGPETSSPAPVSPRE-PSSSPSPLAPARQDLAAPP--QSD--RTTSV-IPEAGTPYP
80 90 100 110 120
100 110 120 130 140 150
pF1KB8 SEFQPQPYSDESRMQVAELTTSLMLQRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTD
. .. . . :: . . . . .:. :: . : . : .... . : .:...:
CCDS55 DPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKEL-RFDVFQ--
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 QFSEGAQHGPYIRDDPALQFLPSELGFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDL
: ... : ..:: :. ...: : ::...::::::::.:: : .
CCDS55 ---EEDSNSDYDLQQPA----PG-------GSEVA-PSMLEITIQNAKAYLLKTSSNSGF
190 200 210 220
220 230 240 250 260 270
pF1KB8 SLYEHLVNLLTKILNQRPEDPLSVLESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQ
.::.:: :.::::::.:::. ....:.... .. : :.:.:... :. :::..::::
CCDS55 NLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQ
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB8 KALFTRSGGGTEG-EQEMEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLV
:::: . : :: .::.:.:..:. .::.::.:::::::::::..::..:::::.:::.
CCDS55 KALFLQ--GHLEGVDQELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLT
290 300 310 320 330 340
340 350 360 370 380 390
pF1KB8 EQQPIHTCRFWGKILGIKRSYLVAEVEFREGE--EEAEEEEVEEMTEGGEVMEAHGEEEG
. .::. :::::::::.. .:.:::::::::: ::.:::.: : ..:: ::: :
CCDS55 DTHPIQRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGES-EAH---ED
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB8 EEDEEKAVDIVPKSVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNA
:::: .::: .: : .:::::::.:::::.:::::::: ::..:: : ::::: :
CCDS55 EEDE------LPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIA
410 420 430 440 450
460 470 480 490 500 510
pF1KB8 RKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSEEEGDEEEE
::::::::: ::.:..:::::::::.::::::::::::.:.:::::::::.::::.::::
CCDS55 RKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEE
460 470 480 490 500 510
520 530 540 550 560 570
pF1KB8 GGAGRDSYEENPDFEGIPVLELVDSMANWVHHTQHILPQGRCTWVNPLQKTEEEEDLGEE
. .::.:.::::::::: :..::.:..:::::.:::: :
CCDS55 AEGGRNSFEENPDFEGIQVIDLVESLSNWVHHVQHILSQRFRIYPPGQHGYPQISFHNML
520 530 540 550 560 570
580 590 600 610 620 630
pF1KB8 EEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGA
CCDS55 LQSFNPTFGLEHMPSPMAKSLKIST
580 590 600
717 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:10:01 2016 done: Sat Nov 5 22:10:01 2016
Total Scan time: 3.290 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]