FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8686, 404 aa
  1>>>pF1KB8686 404 - 404 aa - 404 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7272+/-0.000775; mu= 15.3938+/- 0.047
 mean_var=73.8677+/-14.927, 0's: 0 Z-trim(108.1): 10  B-trim: 0 in 0/52
 Lambda= 0.149227
 statistics sampled from 10000 (10008) to 10000 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.307), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS3076.1 UBA5 gene_id:79876|Hs108|chr3           ( 404) 2643 578.1 4.9e-165
CCDS3077.1 UBA5 gene_id:79876|Hs108|chr3           ( 348) 2288 501.7 4.3e-142


>>CCDS3076.1 UBA5 gene_id:79876|Hs108|chr3                (404 aa)
 initn: 2643 init1: 2643 opt: 2643  Z-score: 3076.5  bits: 578.1 E(32554): 4.9e-165
Smith-Waterman score: 2643; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:1-404)

               10        20        30        40        50        60
pF1KB8 MAESVERLQQRVQELERELAQERSLQVPRSGDGGGGRVRIEKMSSEVVDSNPYSRLMALK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAESVERLQQRVQELERELAQERSLQVPRSGDGGGGRVRIEKMSSEVVDSNPYSRLMALK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 CVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANID
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMSMKPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EKTLKREGVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDFFPTMSMKPN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PQCDDRNCRKQQEEYKKKVAALPKQEVIQEEEEIIHEDNEWGIELVSEVSEEELKNFSGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PQCDDRNCRKQQEEYKKKVAALPKQEVIQEEEEIIHEDNEWGIELVSEVSEEELKNFSGP
              310       320       330       340       350       360

              370       380       390       400    
pF1KB8 VPDLPEGITVAYTIPKKQEDSVTELTVEDSGESLEDLMAKMKNM
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VPDLPEGITVAYTIPKKQEDSVTELTVEDSGESLEDLMAKMKNM
              370       380       390       400    

>>CCDS3077.1 UBA5 gene_id:79876|Hs108|chr3                (348 aa)
 initn: 2288 init1: 2288 opt: 2288  Z-score: 2664.4  bits: 501.7 E(32554): 4.3e-142
Smith-Waterman score: 2288; 100.0% identity (100.0% similar) in 348 aa overlap (57-404:1-348)

         30        40        50        60        70        80      
pF1KB8 VPRSGDGGGGRVRIEKMSSEVVDSNPYSRLMALKRMGIVSDYEKIRTFAVAIVGVGGVGS
                                     ::::::::::::::::::::::::::::::
CCDS30                               MALKRMGIVSDYEKIRTFAVAIVGVGGVGS
                                             10        20        30

         90       100       110       120       130       140      
pF1KB8 VTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEV
               40        50        60        70        80        90

        150       160       170       180       190       200      
pF1KB8 HNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESG
              100       110       120       130       140       150

        210       220       230       240       250       260      
pF1KB8 VSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLKREGVCAASLPTTMGVVAGILV
              160       170       180       190       200       210

        270       280       290       300       310       320      
pF1KB8 QNVLKFLLNFGTVSFYLGYNAMQDFFPTMSMKPNPQCDDRNCRKQQEEYKKKVAALPKQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QNVLKFLLNFGTVSFYLGYNAMQDFFPTMSMKPNPQCDDRNCRKQQEEYKKKVAALPKQE
              220       230       240       250       260       270

        330       340       350       360       370       380      
pF1KB8 VIQEEEEIIHEDNEWGIELVSEVSEEELKNFSGPVPDLPEGITVAYTIPKKQEDSVTELT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VIQEEEEIIHEDNEWGIELVSEVSEEELKNFSGPVPDLPEGITVAYTIPKKQEDSVTELT
              280       290       300       310       320       330

        390       400    
pF1KB8 VEDSGESLEDLMAKMKNM
       ::::::::::::::::::
CCDS30 VEDSGESLEDLMAKMKNM
              340        




404 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:34:21 2016 done: Fri Nov  4 14:34:21 2016
 Total Scan time:  2.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]