FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8688, 502 aa
  1>>>pF1KB8688 502 - 502 aa - 502 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0608+/-0.000852; mu= 10.9664+/- 0.052
 mean_var=114.5128+/-23.041, 0's: 0 Z-trim(110.4): 15  B-trim: 712 in 1/52
 Lambda= 0.119853
 statistics sampled from 11587 (11596) to 11587 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.356), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS6550.1 UBAP1 gene_id:51271|Hs108|chr9          ( 502) 3294 580.3 1.6e-165
CCDS55303.1 UBAP1 gene_id:51271|Hs108|chr9         ( 566) 3221 567.7 1.1e-161


>>CCDS6550.1 UBAP1 gene_id:51271|Hs108|chr9               (502 aa)
 initn: 3294 init1: 3294 opt: 3294  Z-score: 3085.0  bits: 580.3 E(32554): 1.6e-165
Smith-Waterman score: 3294; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KB8 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 KTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFECEEDPFDNLELKTIDEKEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERATLDFKPLHKPNGFITLPQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLASTFHSTSCLRNGTFQN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPPNTGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 TVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV
              430       440       450       460       470       480

              490       500  
pF1KB8 LLLHNNDQDNALEDLMARAGAS
       ::::::::::::::::::::::
CCDS65 LLLHNNDQDNALEDLMARAGAS
              490       500  

>>CCDS55303.1 UBAP1 gene_id:51271|Hs108|chr9              (566 aa)
 initn: 3221 init1: 3221 opt: 3221  Z-score: 3016.0  bits: 567.7 E(32554): 1.1e-161
Smith-Waterman score: 3221; 100.0% identity (100.0% similar) in 491 aa overlap (12-502:76-566)

                                  10        20        30        40 
pF1KB8                    MASKKLGADFHGTFSYLDDVPFKTGDKFKTPAKVGLPIGFS
                                     ::::::::::::::::::::::::::::::
CCDS55 AVGSSAGTEPGRPAGASTFRLLRRRQQRHSGTFSYLDDVPFKTGDKFKTPAKVGLPIGFS
          50        60        70        80        90       100     

              50        60        70        80        90       100 
pF1KB8 LPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAEREAECKIAEAEAKVNSKSGPEGDSK
         110       120       130       140       150       160     

             110       120       130       140       150       160 
pF1KB8 MSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLSPPHIKADFNLADFEC
         170       180       190       200       210       220     

             170       180       190       200       210       220 
pF1KB8 EEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLASLERA
         230       240       250       260       270       280     

             230       240       250       260       270       280 
pF1KB8 TLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTA
         290       300       310       320       330       340     

             290       300       310       320       330       340 
pF1KB8 KLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KLASTFHSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMP
         350       360       370       380       390       400     

             350       360       370       380       390       400 
pF1KB8 SLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVN
         410       420       430       440       450       460     

             410       420       430       440       450       460 
pF1KB8 MGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGYSYECVLRAMKKKGENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFL
         470       480       490       500       510       520     

             470       480       490       500  
pF1KB8 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
       :::::::::::::::::::::::::::::::::::::::::
CCDS55 QLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS
         530       540       550       560      




502 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:36:11 2016 done: Fri Nov  4 14:36:12 2016
 Total Scan time:  3.280 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]