FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8690, 611 aa
  1>>>pF1KB8690 611 - 611 aa - 611 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1001+/-0.000824; mu= -2.3239+/- 0.049
 mean_var=240.0262+/-48.500, 0's: 0 Z-trim(115.1): 14  B-trim: 0 in 0/56
 Lambda= 0.082784
 statistics sampled from 15659 (15669) to 15659 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.481), width:  16
 Scan time:  4.550

The best scores are:                                      opt bits E(32554)
CCDS4.1 PLEKHN1 gene_id:84069|Hs108|chr1           ( 611) 4195 514.0 2.3e-145
CCDS53256.1 PLEKHN1 gene_id:84069|Hs108|chr1       ( 576) 1407 181.0 3.8e-45


>>CCDS4.1 PLEKHN1 gene_id:84069|Hs108|chr1                (611 aa)
 initn: 4195 init1: 4195 opt: 4195  Z-score: 2723.1  bits: 514.0 E(32554): 2.3e-145
Smith-Waterman score: 4195; 99.8% identity (99.8% similar) in 611 aa overlap (1-611:1-611)

               10        20        30        40        50        60
pF1KB8 MGNSHCVPQAPRRLRASFSRKPSLKGNREDSARMSAGLPGPEAARSGDAAANKLFHYIPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. MGNSHCVPQAPRRLRASFSRKPSLKGNREDSARMSAGLPGPEAARSGDAAANKLFHYIPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TDILDLENQRENLEQPFLSVFKKGRRRVPVRNLGKVVHYAKVQLRFQHSQDVSDCYLELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. TDILDLENQRENLEQPFLSVFKKGRRRVPVRNLGKVVHYAKVQLRFQHSQDVSDCYLELF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PAHLYFQAHGSEGLTFQGLLPLTELSVCPLEGSREHAFQITGPLPAPLLVLCPSRAELDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. PAHLYFQAHGSEGLTFQGLLPLTELSVCPLEGSREHAFQITGPLPAPLLVLCPSRAELDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 WLYHLEKQTALLGGPRRCHSAPPQRRLTRLRTASGHEPGGSAVCASRVKLQHLPAQEQWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. WLYHLEKQTALLGGPRRCHSAPPQRRLTRLRTASGHEPGGSAVCASRVKLQHLPAQEQWD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RLLVLYPTSLAIFSEELDGLCFKGELPLRAVHINLEEKEKQIRSFLIEGPLINTIRVVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. RLLVLYPTSLAIFSEELDGLCFKGELPLRAVHINLEEKEKQIRSFLIEGPLINTIRVVCA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SYEDYGHWLLCLRAVTHREGAPPLPGAESFPGSQVMGSGRGSLSSGGQTSWDSGCLAPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. SYEDYGHWLLCLRAVTHREGAPPLPGAESFPGSQVMGSGRGSLSSGGQTSWDSGCLAPPS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TRTSHSLPESSVPSTVGCSSQHTPDQANSDRASIGRRRTELRRSGSSRSPGSKARAEGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. TRTSHSLPESSVPSTVGCSSQHTPDQANSDRASIGRRRTELRRSGSSRSPGSKARAEGRG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 PVTPLHLDLTQLHRLSLESSPDAPDHTSETSHSPLYADPYTPPATSHRRVTDVRGLEEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. PVTPLHLDLTQLHRLSLESSPDAPDHTSETSHSPLYADPYTPPATSHRRVTDVRGLEEFL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 SAMQSAPGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLSKKGALQSRAAQRHRGSAKD
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. SAMQSARGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLSKKGALQSRAAQRHRGSAKD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 GGPQPPDAPQLVSSAREGSPEPWLPLTDGRSPRRSRDPGYDHLWDETLSSSHQKCPQLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS4. GGPQPPDAPQLVSSAREGSPEPWLPLTDGRSPRRSRDPGYDHLWDETLSSSHQKCPQLGG
              550       560       570       580       590       600

              610 
pF1KB8 PEASGGLVQWI
       :::::::::::
CCDS4. PEASGGLVQWI
              610 

>>CCDS53256.1 PLEKHN1 gene_id:84069|Hs108|chr1            (576 aa)
 initn: 2682 init1: 1407 opt: 1407  Z-score: 923.9  bits: 181.0 E(32554): 3.8e-45
Smith-Waterman score: 3751; 90.4% identity (90.4% similar) in 623 aa overlap (1-611:1-576)

               10        20        30        40        50        60
pF1KB8 MGNSHCVPQAPRRLRASFSRKPSLKGNREDSARMSAGLPGPEAARSGDAAANKLFHYIPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGNSHCVPQAPRRLRASFSRKPSLKGNREDSARMSAGLPGPEAARSGDAAANKLFHYIPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TDILDLENQRENLEQPFLSVFKKGRRRVPVRNLGKVVHYAKVQLRFQHSQDVSDCYLELF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TDILDLENQRENLEQPFLSVFKKGRRRVPVRNLGKVVHYAKVQLRFQHSQDVSDCYLELF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PAHLYFQAHGSEGLTFQGLLPLTELSVCPLEGSREHAFQITGPLPAPLLVLCPSRAELDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PAHLYFQAHGSEGLTFQGLLPLTELSVCPLEGSREHAFQITGPLPAPLLVLCPSRAELDR
              130       140       150       160       170       180

              190       200                   210       220        
pF1KB8 WLYHLEKQTALLGGPRRCHSAPPQ------------RRLTRLRTASGHEPGGSAVCASRV
       ::::::::::::::::::::::::            ::::::::::::::::::::::::
CCDS53 WLYHLEKQTALLGGPRRCHSAPPQGSCGDELPWTLQRRLTRLRTASGHEPGGSAVCASRV
              190       200       210       220       230       240

      230       240       250       260       270       280        
pF1KB8 KLQHLPAQEQWDRLLVLYPTSLAIFSEELDGLCFKGELPLRAVHINLEEKEKQIRSFLIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KLQHLPAQEQWDRLLVLYPTSLAIFSEELDGLCFKGELPLRAVHINLEEKEKQIRSFLIE
              250       260       270       280       290       300

      290       300       310       320       330       340        
pF1KB8 GPLINTIRVVCASYEDYGHWLLCLRAVTHREGAPPLPGAESFPGSQVMGSGRGSLSSGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GPLINTIRVVCASYEDYGHWLLCLRAVTHREGAPPLPGAESFPGSQVMGSGRGSLSSGGQ
              310       320       330       340       350       360

      350       360       370       380       390       400        
pF1KB8 TSWDSGCLAPPSTRTSHSLPESSVPSTVGCSSQHTPDQANSDRASIGRRRTELRRSGSSR
       ::::::::::::::::::::::::::::::::::::                        
CCDS53 TSWDSGCLAPPSTRTSHSLPESSVPSTVGCSSQHTP------------------------
              370       380       390                              

      410       420       430       440       450       460        
pF1KB8 SPGSKARAEGRGPVTPLHLDLTQLHRLSLESSPDAPDHTSETSHSPLYADPYTPPATSHR
                              :::::::::::::::::::::::::::::::::::::
CCDS53 -----------------------LHRLSLESSPDAPDHTSETSHSPLYADPYTPPATSHR
                               400       410       420       430   

      470       480       490       500       510       520        
pF1KB8 RVTDVRGLEEFLSAMQSAPGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLSKKGALQS
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS53 RVTDVRGLEEFLSAMQSARGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLSKKGALQS
           440       450       460       470       480       490   

      530       540       550       560       570       580        
pF1KB8 RAAQRHRGSAKDGGPQPPDAPQLVSSAREGSPEPWLPLTDGRSPRRSRDPGYDHLWDETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RAAQRHRGSAKDGGPQPPDAPQLVSSAREGSPEPWLPLTDGRSPRRSRDPGYDHLWDETL
           500       510       520       530       540       550   

      590       600       610 
pF1KB8 SSSHQKCPQLGGPEASGGLVQWI
       :::::::::::::::::::::::
CCDS53 SSSHQKCPQLGGPEASGGLVQWI
           560       570      




611 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:37:27 2016 done: Fri Nov  4 14:37:28 2016
 Total Scan time:  4.550 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]