FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8692, 479 aa
  1>>>pF1KB8692 479 - 479 aa - 479 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3904+/-0.000988; mu= 5.3032+/- 0.060
 mean_var=209.9069+/-41.340, 0's: 0 Z-trim(112.3): 18  B-trim: 3 in 1/53
 Lambda= 0.088524
 statistics sampled from 13068 (13072) to 13068 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.402), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(32554)
CCDS3546.1 UTP3 gene_id:57050|Hs108|chr4           ( 479) 3088 407.0 2.2e-113


>>CCDS3546.1 UTP3 gene_id:57050|Hs108|chr4                (479 aa)
 initn: 3088 init1: 3088 opt: 3088  Z-score: 2149.1  bits: 407.0 E(32554): 2.2e-113
Smith-Waterman score: 3088; 99.8% identity (100.0% similar) in 479 aa overlap (1-479:1-479)

               10        20        30        40        50        60
pF1KB8 MVGRSRRRGAAKWAAVRAKAGPTLTDENGDDLGLPPSPGDTSYYQDQVDDFHEARSRAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MVGRSRRRGAAKWAAVRAKAGPTLTDENGDDLGLPPSPGDTSYYQDQVDDFHEARSRAAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AKGWNEVQSGDEEDGEEEEEEVLALDMDDEDDEDGGNAGEEEEEENADDDGGSSVQSEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AKGWNEVQSGDEEDGEEEEEEVLALDMDDEDDEDGGNAGEEEEEENADDDGGSSVQSEAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ASVDPSLSWGQRKKLYYDTDYGSKSRGRQSQQEAEEEEREEEEEAQIIQRRLAQALQEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ASVDPSLSWGQRKKLYYDTDYGSKSRGRQSQQEAEEEEREEEEEAQIIQRRLAQALQEDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FGVAWVEAFAKPVPQVDEAETRVVKDLAKVSVKEKLKMLRKESPELLELIEDLKVKLTEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 FGVAWVEAFAKPVPQVDEAETRVVKDLAKVSVKEKLKMLRKESPELLELIEDLKVKLTEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LVTYRNLINKLSVVDQKLSSEVRHLLTLKDDAVKKELIPKAKSTKPKPKSVSKTSAAACA
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS35 LVTYRNLINKLSVVDQKLSSEIRHLLTLKDDAVKKELIPKAKSTKPKPKSVSKTSAAACA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VTDLSDDSDFDEKAKLKYYKEIEDRQKLKRKKEENSTEEQALEDQNAKRAITYQIAKNRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VTDLSDDSDFDEKAKLKYYKEIEDRQKLKRKKEENSTEEQALEDQNAKRAITYQIAKNRG
              370       380       390       400       410       420

              430       440       450       460       470         
pF1KB8 LTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRKEEQRYSGELSGIRAGVKKSIKLK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRKEEQRYSGELSGIRAGVKKSIKLK
              430       440       450       460       470         




479 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:37:48 2016 done: Sat Nov  5 01:37:49 2016
 Total Scan time:  3.680 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]