FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8692, 479 aa
  1>>>pF1KB8692 479 - 479 aa - 479 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9019+/-0.0004; mu= 2.0359+/- 0.025
 mean_var=230.5201+/-45.768, 0's: 0 Z-trim(120.0): 6  B-trim: 0 in 0/56
 Lambda= 0.084473
 statistics sampled from 34699 (34705) to 34699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.407), width:  16
 Scan time: 11.360

The best scores are:                                      opt bits E(85289)
NP_065101 (OMIM: 611614) something about silencing ( 479) 3088 389.3 1.2e-107


>>NP_065101 (OMIM: 611614) something about silencing pro  (479 aa)
 initn: 3088 init1: 3088 opt: 3088  Z-score: 2053.4  bits: 389.3 E(85289): 1.2e-107
Smith-Waterman score: 3088; 99.8% identity (100.0% similar) in 479 aa overlap (1-479:1-479)

               10        20        30        40        50        60
pF1KB8 MVGRSRRRGAAKWAAVRAKAGPTLTDENGDDLGLPPSPGDTSYYQDQVDDFHEARSRAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MVGRSRRRGAAKWAAVRAKAGPTLTDENGDDLGLPPSPGDTSYYQDQVDDFHEARSRAAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AKGWNEVQSGDEEDGEEEEEEVLALDMDDEDDEDGGNAGEEEEEENADDDGGSSVQSEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 AKGWNEVQSGDEEDGEEEEEEVLALDMDDEDDEDGGNAGEEEEEENADDDGGSSVQSEAE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ASVDPSLSWGQRKKLYYDTDYGSKSRGRQSQQEAEEEEREEEEEAQIIQRRLAQALQEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ASVDPSLSWGQRKKLYYDTDYGSKSRGRQSQQEAEEEEREEEEEAQIIQRRLAQALQEDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FGVAWVEAFAKPVPQVDEAETRVVKDLAKVSVKEKLKMLRKESPELLELIEDLKVKLTEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 FGVAWVEAFAKPVPQVDEAETRVVKDLAKVSVKEKLKMLRKESPELLELIEDLKVKLTEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 KDELEPLLELVEQGIIPPGKGSQYLRTKYNLYLNYCSNISFYLILKARRVPAHGHPVIER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LVTYRNLINKLSVVDQKLSSEVRHLLTLKDDAVKKELIPKAKSTKPKPKSVSKTSAAACA
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
NP_065 LVTYRNLINKLSVVDQKLSSEIRHLLTLKDDAVKKELIPKAKSTKPKPKSVSKTSAAACA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VTDLSDDSDFDEKAKLKYYKEIEDRQKLKRKKEENSTEEQALEDQNAKRAITYQIAKNRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 VTDLSDDSDFDEKAKLKYYKEIEDRQKLKRKKEENSTEEQALEDQNAKRAITYQIAKNRG
              370       380       390       400       410       420

              430       440       450       460       470         
pF1KB8 LTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRKEEQRYSGELSGIRAGVKKSIKLK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRKEEQRYSGELSGIRAGVKKSIKLK
              430       440       450       460       470         




479 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:37:49 2016 done: Sat Nov  5 01:37:51 2016
 Total Scan time: 11.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]