Result of FASTA (ccds) for
pF1KB8693
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8693, 538 aa
1>>>pF1KB8693 538 - 538 aa - 538 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7076+/-0.000807; mu= 16.1304+/- 0.049
mean_var=66.7629+/-13.430, 0's: 0 Z-trim(107.4): 24 B-trim: 0 in 0/51
Lambda= 0.156966
statistics sampled from 9536 (9553) to 9536 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.293), width: 16
Scan time: 3.530
The best scores are: opt bits E(32554)
CCDS43045.1 MTMR14 gene_id:64419|Hs108|chr3 ( 538) 3595 823.1 0
CCDS43044.1 MTMR14 gene_id:64419|Hs108|chr3 ( 598) 3234 741.3 7.2e-214
CCDS43043.1 MTMR14 gene_id:64419|Hs108|chr3 ( 650) 3234 741.3 7.7e-214
>>CCDS43045.1 MTMR14 gene_id:64419|Hs108|chr3 (538 aa)
initn: 3595 init1: 3595 opt: 3595 Z-score: 4395.7 bits: 823.1 E(32554): 0
Smith-Waterman score: 3595; 99.8% identity (99.8% similar) in 538 aa overlap (1-538:1-538)
10 20 30 40 50 60
pF1KB8 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVGRIEKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS43 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWLA
430 440 450 460 470 480
490 500 510 520 530
pF1KB8 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
490 500 510 520 530
>>CCDS43044.1 MTMR14 gene_id:64419|Hs108|chr3 (598 aa)
initn: 3581 init1: 3234 opt: 3234 Z-score: 3953.1 bits: 741.3 E(32554): 7.2e-214
Smith-Waterman score: 3288; 89.3% identity (89.3% similar) in 570 aa overlap (1-510:1-570)
10 20 30 40 50 60
pF1KB8 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVGRIEKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS43 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
370 380 390 400 410 420
430 440 450 460 470
pF1KB8 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAW--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK
430 440 450 460 470 480
480
pF1KB8 ----------------------------------------------------------LA
::
CCDS43 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRLA
490 500 510 520 530 540
490 500 510 520 530
pF1KB8 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
::::::::::::::::::::::::::::::
CCDS43 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
550 560 570 580 590
>>CCDS43043.1 MTMR14 gene_id:64419|Hs108|chr3 (650 aa)
initn: 3581 init1: 3234 opt: 3234 Z-score: 3952.5 bits: 741.3 E(32554): 7.7e-214
Smith-Waterman score: 3234; 99.8% identity (99.8% similar) in 478 aa overlap (1-478:1-478)
10 20 30 40 50 60
pF1KB8 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVGRIEKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS43 MAGARAAAAAASAGSSASSGNQPPQELGLGELLEEFSRTQYRAKDGSGTGGSKVERIEKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CLELFGRDYCFSVIPNTNGDICGHYPRHIVFLEYESSEKEKDTFESTVQVSKLQDLIHRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KMARCRGRFVCPVILFKGKHICRSATLAGWGELYGRSGYNYFFSGGADDAWADVEDVTEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DCALRSGDTHLFDKVRGYDIKLLRYLSVKYICDLMVENKKVKFGMNVTSSEKVDKAQRYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DFTLLSIPYPGCEFFKEYKDRDYMAEGLIFNWKQDYVDAPLSIPDFLTHSLNIDWSQYQC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WDLVQQTQNYLKLLLSLVNSDDDSGLLVHCISGWDRTPLFISLLRLSLWADGLIHTSLKP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TEILYLTVAYDWFLFGHMLVDRLSKGEEIFFFCFNFLKHITSEEFSALKTQRRKSLPARD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GGFTLEDICMLRRKDRGSTTSLGSDFSLVMESSPGATGSFTYEAVELVPAGAPTQAAWRK
430 440 450 460 470 480
490 500 510 520 530
pF1KB8 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQFARGVGLRSISSNAL
CCDS43 SHSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRMGSSPLEVPKPRSV
490 500 510 520 530 540
>--
initn: 396 init1: 361 opt: 361 Z-score: 436.4 bits: 90.7 E(32554): 5.5e-18
Smith-Waterman score: 361; 100.0% identity (100.0% similar) in 60 aa overlap (479-538:591-650)
450 460 470 480 490 500
pF1KB8 VMESSPGATGSFTYEAVELVPAGAPTQAAWLAALSDRETRLQEVRSAFLAAYSSTVGLRA
::::::::::::::::::::::::::::::
CCDS43 GCGSIQERAVLHTDSSLPFSFPDELPNSCLLAALSDRETRLQEVRSAFLAAYSSTVGLRA
570 580 590 600 610 620
510 520 530
pF1KB8 VAPSPSGAIGGLLEQFARGVGLRSISSNAL
::::::::::::::::::::::::::::::
CCDS43 VAPSPSGAIGGLLEQFARGVGLRSISSNAL
630 640 650
538 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:39:58 2016 done: Fri Nov 4 14:39:58 2016
Total Scan time: 3.530 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]