FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8704, 238 aa
  1>>>pF1KB8704 238 - 238 aa - 238 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4007+/-0.000968; mu= -6.7738+/- 0.059
 mean_var=297.1707+/-59.973, 0's: 0 Z-trim(114.7): 14  B-trim: 195 in 1/52
 Lambda= 0.074400
 statistics sampled from 15282 (15295) to 15282 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.47), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS33830.1 GAP43 gene_id:2596|Hs108|chr3          ( 238) 1517 175.2 3.4e-44
CCDS46890.1 GAP43 gene_id:2596|Hs108|chr3          ( 274) 1441 167.0 1.1e-41


>>CCDS33830.1 GAP43 gene_id:2596|Hs108|chr3               (238 aa)
 initn: 1517 init1: 1517 opt: 1517  Z-score: 906.8  bits: 175.2 E(32554): 3.4e-44
Smith-Waterman score: 1517; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KB8 MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKDDVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKDDVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAAT
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KB8 TPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKESARQDEGKEEEPEADQEHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKESARQDEGKEEEPEADQEHA
              190       200       210       220       230        

>>CCDS46890.1 GAP43 gene_id:2596|Hs108|chr3               (274 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 861.9  bits: 167.0 E(32554): 1.1e-41
Smith-Waterman score: 1441; 99.6% identity (100.0% similar) in 229 aa overlap (10-238:46-274)

                                    10        20        30         
pF1KB8                      MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQ
                                     .:::::::::::::::::::::::::::::
CCDS46 LPCLGGLRKNLQRAVRPSPYSLGFLTFWISRVEKNDDDQKIEQDGIKPEDKAHKAATKIQ
          20        30        40        50        60        70     

      40        50        60        70        80        90         
pF1KB8 ASFRGHITRKKLKGEKKDDVQAAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ASFRGHITRKKLKGEKKDDVQAAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPD
          80        90       100       110       120       130     

     100       110       120       130       140       150         
pF1KB8 EPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDA
         140       150       160       170       180       190     

     160       170       180       190       200       210         
pF1KB8 PAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKE
         200       210       220       230       240       250     

     220       230        
pF1KB8 SARQDEGKEEEPEADQEHA
       :::::::::::::::::::
CCDS46 SARQDEGKEEEPEADQEHA
         260       270    




238 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:45:41 2016 done: Fri Nov  4 14:45:41 2016
 Total Scan time:  2.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]