FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8704, 238 aa
  1>>>pF1KB8704 238 - 238 aa - 238 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7981+/-0.000388; mu= -15.5518+/- 0.024
 mean_var=319.6505+/-64.139, 0's: 0 Z-trim(122.5): 10  B-trim: 0 in 0/57
 Lambda= 0.071736
 statistics sampled from 40674 (40688) to 40674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.477), width:  16
 Scan time:  7.900

The best scores are:                                      opt bits E(85289)
NP_002036 (OMIM: 162060) neuromodulin isoform 2 [H ( 238) 1517 169.6 4.2e-42
XP_016861617 (OMIM: 162060) PREDICTED: neuromoduli ( 274) 1441 161.8 1.1e-39
NP_001123536 (OMIM: 162060) neuromodulin isoform 1 ( 274) 1441 161.8 1.1e-39


>>NP_002036 (OMIM: 162060) neuromodulin isoform 2 [Homo   (238 aa)
 initn: 1517 init1: 1517 opt: 1517  Z-score: 876.9  bits: 169.6 E(85289): 4.2e-42
Smith-Waterman score: 1517; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)

               10        20        30        40        50        60
pF1KB8 MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKDDVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQASFRGHITRKKLKGEKKDDVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVPAAVTAAAAT
              130       140       150       160       170       180

              190       200       210       220       230        
pF1KB8 TPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKESARQDEGKEEEPEADQEHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKESARQDEGKEEEPEADQEHA
              190       200       210       220       230        

>>XP_016861617 (OMIM: 162060) PREDICTED: neuromodulin is  (274 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 833.4  bits: 161.8 E(85289): 1.1e-39
Smith-Waterman score: 1441; 99.6% identity (100.0% similar) in 229 aa overlap (10-238:46-274)

                                    10        20        30         
pF1KB8                      MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQ
                                     .:::::::::::::::::::::::::::::
XP_016 LPCLGGLRKNLQRAVRPSPYSLGFLTFWISRVEKNDDDQKIEQDGIKPEDKAHKAATKIQ
          20        30        40        50        60        70     

      40        50        60        70        80        90         
pF1KB8 ASFRGHITRKKLKGEKKDDVQAAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASFRGHITRKKLKGEKKDDVQAAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPD
          80        90       100       110       120       130     

     100       110       120       130       140       150         
pF1KB8 EPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDA
         140       150       160       170       180       190     

     160       170       180       190       200       210         
pF1KB8 PAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKE
         200       210       220       230       240       250     

     220       230        
pF1KB8 SARQDEGKEEEPEADQEHA
       :::::::::::::::::::
XP_016 SARQDEGKEEEPEADQEHA
         260       270    

>>NP_001123536 (OMIM: 162060) neuromodulin isoform 1 [Ho  (274 aa)
 initn: 1441 init1: 1441 opt: 1441  Z-score: 833.4  bits: 161.8 E(85289): 1.1e-39
Smith-Waterman score: 1441; 99.6% identity (100.0% similar) in 229 aa overlap (10-238:46-274)

                                    10        20        30         
pF1KB8                      MLCCMRRTKQVEKNDDDQKIEQDGIKPEDKAHKAATKIQ
                                     .:::::::::::::::::::::::::::::
NP_001 LPCLGGLRKNLQRAVRPSPYSLGFLTFWISRVEKNDDDQKIEQDGIKPEDKAHKAATKIQ
          20        30        40        50        60        70     

      40        50        60        70        80        90         
pF1KB8 ASFRGHITRKKLKGEKKDDVQAAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASFRGHITRKKLKGEKKDDVQAAEAEANKKDEAPVADGVEKKGEGTTTAEAAPATGSKPD
          80        90       100       110       120       130     

     100       110       120       130       140       150         
pF1KB8 EPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDA
         140       150       160       170       180       190     

     160       170       180       190       200       210         
pF1KB8 PAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAKEEPKQADVPAAVTAAAATTPAAEDAAAKATAQPPTETGESSQAEENIEAVDETKPKE
         200       210       220       230       240       250     

     220       230        
pF1KB8 SARQDEGKEEEPEADQEHA
       :::::::::::::::::::
NP_001 SARQDEGKEEEPEADQEHA
         260       270    




238 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:45:42 2016 done: Fri Nov  4 14:45:43 2016
 Total Scan time:  7.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]