Result of FASTA (ccds) for pF1KB8728
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8728, 372 aa
  1>>>pF1KB8728 372 - 372 aa - 372 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7444+/-0.000826; mu= 14.8727+/- 0.050
 mean_var=73.1048+/-14.373, 0's: 0 Z-trim(108.0): 87  B-trim: 3 in 1/50
 Lambda= 0.150003
 statistics sampled from 9844 (9935) to 9844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.305), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS13752.1 USP18 gene_id:11274|Hs108|chr22        ( 372) 2555 562.0  3e-160
CCDS41619.1 USP47 gene_id:55031|Hs108|chr11        (1287)  412 98.5 3.6e-20
CCDS60725.1 USP47 gene_id:55031|Hs108|chr11        (1355)  412 98.5 3.8e-20
CCDS81554.1 USP47 gene_id:55031|Hs108|chr11        (1375)  412 98.5 3.8e-20
CCDS44084.1 USP48 gene_id:84196|Hs108|chr1         ( 485)  359 86.8 4.4e-17
CCDS81277.1 USP48 gene_id:84196|Hs108|chr1         ( 983)  359 86.9 8.1e-17
CCDS30623.1 USP48 gene_id:84196|Hs108|chr1         (1035)  359 86.9 8.4e-17
CCDS46547.1 USP40 gene_id:55230|Hs108|chr2         (1247)  299 74.0   8e-13
CCDS43892.1 USP20 gene_id:10868|Hs108|chr9         ( 914)  286 71.1 4.3e-12
CCDS14370.1 USP51 gene_id:158880|Hs108|chrX        ( 711)  273 68.3 2.4e-11
CCDS680.1 USP33 gene_id:23032|Hs108|chr1           ( 828)  266 66.8   8e-11
CCDS65260.1 USP27X gene_id:389856|Hs108|chrX       ( 438)  262 65.8 8.4e-11
CCDS679.1 USP33 gene_id:23032|Hs108|chr1           ( 911)  266 66.8 8.6e-11
CCDS44154.2 USP24 gene_id:23358|Hs108|chr1         (2620)  272 68.3 8.7e-11
CCDS678.1 USP33 gene_id:23032|Hs108|chr1           ( 942)  266 66.8 8.9e-11


>>CCDS13752.1 USP18 gene_id:11274|Hs108|chr22             (372 aa)
 initn: 2555 init1: 2555 opt: 2555  Z-score: 2990.4  bits: 562.0 E(32554): 3e-160
Smith-Waterman score: 2555; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)

               10        20        30        40        50        60
pF1KB8 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GQTCCLNSLIQVFVMNVDFTRILKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQTCCLNSLIQVFVMNVDFTRILKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 CAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 QVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQE
              310       320       330       340       350       360

              370  
pF1KB8 TAYLLVYMKMEC
       ::::::::::::
CCDS13 TAYLLVYMKMEC
              370  

>>CCDS41619.1 USP47 gene_id:55031|Hs108|chr11             (1287 aa)
 initn: 547 init1: 228 opt: 412  Z-score: 475.6  bits: 98.5 E(32554): 3.6e-20
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:98-449)

             30        40        50        60        70        80  
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
                                     : ::: : ..:: ::::.:.. :. .:   
CCDS41 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
        70        80        90       100       110       120       

             90       100       110       120       130       140  
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
       : .    .. ..   :.:.:.  :.  .: :...:..  ...  .   .   . :::. .
CCDS41 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
       130       140       150       160       170       180       

            150       160       170       180       190       200  
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
       :   ... ....  ... .. .. ::  ..:: . :..:..:. : ...: .:: .    
CCDS41 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
       190       200       210       220       230       240       

             210       220       230       240       250       260 
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
       .:. . ..:.::: :.::. :.. .. ::: : ::  ... :.. :.:  ::..: ::..
CCDS41 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
       250       260       270       280       290       300       

               270       280             290                       
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
         .  ..:     . ::. ::.: .. .      . ::: :.                  
CCDS41 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
       310       320       330       340       350       360       

                     300                    310       320       330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
                  : .:: .             ::::.:..: : : .::: . :..  : .
CCDS41 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
       370       380       390       400       410       420       

              340       350       360       370                    
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC                  
       :. :::...  .. :::. :.:                                      
CCDS41 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
       430       440       450       460       470       480       

>>CCDS60725.1 USP47 gene_id:55031|Hs108|chr11             (1355 aa)
 initn: 547 init1: 228 opt: 412  Z-score: 475.3  bits: 98.5 E(32554): 3.8e-20
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:166-517)

             30        40        50        60        70        80  
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
                                     : ::: : ..:: ::::.:.. :. .:   
CCDS60 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
         140       150       160       170       180       190     

             90       100       110       120       130       140  
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
       : .    .. ..   :.:.:.  :.  .: :...:..  ...  .   .   . :::. .
CCDS60 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
         200       210       220       230       240       250     

            150       160       170       180       190       200  
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
       :   ... ....  ... .. .. ::  ..:: . :..:..:. : ...: .:: .    
CCDS60 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
         260       270       280       290       300       310     

             210       220       230       240       250       260 
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
       .:. . ..:.::: :.::. :.. .. ::: : ::  ... :.. :.:  ::..: ::..
CCDS60 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
         320       330       340       350       360       370     

               270       280             290                       
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
         .  ..:     . ::. ::.: .. .      . ::: :.                  
CCDS60 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
         380       390       400       410       420       430     

                     300                    310       320       330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
                  : .:: .             ::::.:..: : : .::: . :..  : .
CCDS60 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
         440       450       460       470       480       490     

              340       350       360       370                    
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC                  
       :. :::...  .. :::. :.:                                      
CCDS60 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
         500       510       520       530       540       550     

>>CCDS81554.1 USP47 gene_id:55031|Hs108|chr11             (1375 aa)
 initn: 547 init1: 228 opt: 412  Z-score: 475.2  bits: 98.5 E(32554): 3.8e-20
Smith-Waterman score: 479; 27.0% identity (57.7% similar) in 352 aa overlap (53-352:186-537)

             30        40        50        60        70        80  
pF1KB8 PADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTRI
                                     : ::: : ..:: ::::.:.. :. .:   
CCDS81 PLPREGSGGSTSDYVSQSYSYSSILNKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNA
         160       170       180       190       200       210     

             90       100       110       120       130       140  
pF1KB8 LKRITVPRGADEQRRSVPFQMLLLLEKMQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQ
       : .    .. ..   :.:.:.  :.  .: :...:..  ...  .   .   . :::. .
CCDS81 LYKWEFEESEEDPVTSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQE
         220       230       240       250       260       270     

            150       160       170       180       190       200  
pF1KB8 LYLKLWNLIKDQITDVHLVERLQALYTIRVKDSLICVDCAMESSRNSSMLTLPLSLFDV-
       :   ... ....  ... .. .. ::  ..:: . :..:..:. : ...: .:: .    
CCDS81 LCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYG
         280       290       300       310       320       330     

             210       220       230       240       250       260 
pF1KB8 DSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTHLPQTLTIHLMRFSI
       .:. . ..:.::: :.::. :.. .. ::: : ::  ... :.. :.:  ::..: ::..
CCDS81 SSQAFASVEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDF
         340       350       360       370       380       390     

               270       280             290                       
pF1KB8 RNSQTRKI--CHSLYFPQSLDFSQILPM------KRESC-DA------------------
         .  ..:     . ::. ::.: .. .      . ::: :.                  
CCDS81 DYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFS
         400       410       420       430       440       450     

                     300                    310       320       330
pF1KB8 -----------EEQSGGQ-------------YELFAVIAHVGMADSGHYCVYIRNAVDGK
                  : .:: .             ::::.:..: : : .::: . :..  : .
CCDS81 NDDGVDEGICLETNSGTEKISKSGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFSDEQ
         460       470       480       490       500       510     

              340       350       360       370                    
pF1KB8 WFCFNDSNICLVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC                  
       :. :::...  .. :::. :.:                                      
CCDS81 WYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEV
         520       530       540       550       560       570     

>>CCDS44084.1 USP48 gene_id:84196|Hs108|chr1              (485 aa)
 initn: 287 init1: 135 opt: 359  Z-score: 420.2  bits: 86.8 E(32554): 4.4e-17
Smith-Waterman score: 359; 27.0% identity (56.7% similar) in 307 aa overlap (52-339:86-374)

              30        40        50        60        70        80 
pF1KB8 SPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTR
                                     ...::: :.: :: .:...::. .:... .
CCDS44 VGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQ
          60        70        80        90       100       110     

                     90       100           110       120       130
pF1KB8 IL-------KRITVPRGADEQRRSVP----FQMLLLLEKMQDSRQKAVRPLELAYCLQKC
        :       .   .  : .:..   :     ..  :.  .:.: .. . :  ..  :   
CCDS44 ALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKAL---
         120       130       140       150       160       170     

              140       150            160       170       180     
pF1KB8 NVPLFVQHDAAQLYLKLWNLIKDQIT-----DVHLVERLQALYTIRVKDSLICVDCAMES
       ..    :.:: ..   . .:..: ..     ::. .  .:  .  .     .: .:. ::
CCDS44 GLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNI--VQQQFCGEYAYVTVCNQCGRES
            180       190       200         210       220       230

         190       200       210       220       230       240     
pF1KB8 SRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKL
       .  :..  : :..     .  : : : .  :.. ..: . .. ::::: .:  . . ..:
CCDS44 KLLSKFYELELNI-----QGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRL
              240            250       260       270       280     

         250       260       270       280       290       300     
pF1KB8 THLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGGQY--E
         :: ::...:::: .     :.  :.  .   . ::.:: :.       :..::.:  :
CCDS44 LSLPCTLNLQLMRFVF----DRQTGHKKKLNTYIGFSEILDME----PYVEHKGGSYVYE
         290       300           310       320           330       

           310        320       330       340       350       360  
pF1KB8 LFAVIAHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQETA
       : ::. : :. : :::: .....  .:.:. ::: .:                       
CCDS44 LSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQ
       340       350       360       370       380       390       

            370                                                    
pF1KB8 YLLVYMKMEC                                                  
                                                                   
CCDS44 TRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWCIEMAEM
       400       410       420       430       440       450       

>>CCDS81277.1 USP48 gene_id:84196|Hs108|chr1              (983 aa)
 initn: 287 init1: 135 opt: 359  Z-score: 415.4  bits: 86.9 E(32554): 8.1e-17
Smith-Waterman score: 359; 27.0% identity (56.7% similar) in 307 aa overlap (52-339:86-374)

              30        40        50        60        70        80 
pF1KB8 SPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTR
                                     ...::: :.: :: .:...::. .:... .
CCDS81 VGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQ
          60        70        80        90       100       110     

                     90       100           110       120       130
pF1KB8 IL-------KRITVPRGADEQRRSVP----FQMLLLLEKMQDSRQKAVRPLELAYCLQKC
        :       .   .  : .:..   :     ..  :.  .:.: .. . :  ..  :   
CCDS81 ALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKAL---
         120       130       140       150       160       170     

              140       150            160       170       180     
pF1KB8 NVPLFVQHDAAQLYLKLWNLIKDQIT-----DVHLVERLQALYTIRVKDSLICVDCAMES
       ..    :.:: ..   . .:..: ..     ::. .  .:  .  .     .: .:. ::
CCDS81 GLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNI--VQQQFCGEYAYVTVCNQCGRES
            180       190       200         210       220       230

         190       200       210       220       230       240     
pF1KB8 SRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKL
       .  :..  : :..     .  : : : .  :.. ..: . .. ::::: .:  . . ..:
CCDS81 KLLSKFYELELNI-----QGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRL
              240            250       260       270       280     

         250       260       270       280       290       300     
pF1KB8 THLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGGQY--E
         :: ::...:::: .     :.  :.  .   . ::.:: :.       :..::.:  :
CCDS81 LSLPCTLNLQLMRFVF----DRQTGHKKKLNTYIGFSEILDME----PYVEHKGGSYVYE
         290       300           310       320           330       

           310        320       330       340       350       360  
pF1KB8 LFAVIAHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQETA
       : ::. : :. : :::: .....  .:.:. ::: .:                       
CCDS81 LSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQ
       340       350       360       370       380       390       

            370                                                    
pF1KB8 YLLVYMKMEC                                                  
                                                                   
CCDS81 TRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWCIEMAEM
       400       410       420       430       440       450       

>>CCDS30623.1 USP48 gene_id:84196|Hs108|chr1              (1035 aa)
 initn: 287 init1: 135 opt: 359  Z-score: 415.1  bits: 86.9 E(32554): 8.4e-17
Smith-Waterman score: 359; 27.0% identity (56.7% similar) in 307 aa overlap (52-339:86-374)

              30        40        50        60        70        80 
pF1KB8 SPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFVMNVDFTR
                                     ...::: :.: :: .:...::. .:... .
CCDS30 VGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQ
          60        70        80        90       100       110     

                     90       100           110       120       130
pF1KB8 IL-------KRITVPRGADEQRRSVP----FQMLLLLEKMQDSRQKAVRPLELAYCLQKC
        :       .   .  : .:..   :     ..  :.  .:.: .. . :  ..  :   
CCDS30 ALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKAL---
         120       130       140       150       160       170     

              140       150            160       170       180     
pF1KB8 NVPLFVQHDAAQLYLKLWNLIKDQIT-----DVHLVERLQALYTIRVKDSLICVDCAMES
       ..    :.:: ..   . .:..: ..     ::. .  .:  .  .     .: .:. ::
CCDS30 GLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNI--VQQQFCGEYAYVTVCNQCGRES
            180       190       200         210       220       230

         190       200       210       220       230       240     
pF1KB8 SRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKL
       .  :..  : :..     .  : : : .  :.. ..: . .. ::::: .:  . . ..:
CCDS30 KLLSKFYELELNI-----QGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRL
              240            250       260       270       280     

         250       260       270       280       290       300     
pF1KB8 THLPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQSGGQY--E
         :: ::...:::: .     :.  :.  .   . ::.:: :.       :..::.:  :
CCDS30 LSLPCTLNLQLMRFVF----DRQTGHKKKLNTYIGFSEILDME----PYVEHKGGSYVYE
         290       300           310       320           330       

           310        320       330       340       350       360  
pF1KB8 LFAVIAHVGM-ADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQETA
       : ::. : :. : :::: .....  .:.:. ::: .:                       
CCDS30 LSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQ
       340       350       360       370       380       390       

            370                                                    
pF1KB8 YLLVYMKMEC                                                  
                                                                   
CCDS30 TRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEWCIEMAEM
       400       410       420       430       440       450       

>>CCDS46547.1 USP40 gene_id:55230|Hs108|chr2              (1247 aa)
 initn: 193 init1:  77 opt: 299  Z-score: 343.7  bits: 74.0 E(32554): 8e-13
Smith-Waterman score: 299; 25.1% identity (55.6% similar) in 338 aa overlap (29-348:34-348)

                 10        20        30        40        50        
pF1KB8   MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPRERPRAWDYPHGLVGLH
                                     :: . . ..   :::         .: :..
CCDS46 FLRVVFSFTMFGDLFEEEYSTVSNNQYGKGKKLKTKALEPPAPREFT-------NLSGIR
            10        20        30        40        50             

       60        70        80        90                100         
pF1KB8 NIGQTCCLNSLIQVFVMNVDFTRILKRITVPR--G-------ADEQRRSVPFQMLLLLEK
       : : :: ::::.:.. .. .: . :  .  :.  :        : . : .:.:.  :. .
CCDS46 NQGGTCYLNSLLQTLHFTPEFREALFSLG-PEELGLFEDKDKPDAKVRIIPLQLQRLFAQ
         60        70        80         90       100       110     

     110       120       130       140       150       160         
pF1KB8 MQDSRQKAVRPLELAYCLQKCNVPLFVQHDAAQLYLKLWNLIKDQITDVHLVERLQALYT
       .    :.:.   .:.  .   .   . :::. .:   :.. .. ... .   . .  :: 
CCDS46 LLLLDQEAASTADLTDSFGWTSNEEMRQHDVQELNRILFSALETSLVGTSGHDLIYRLYH
         120       130       140       150       160       170     

     170       180       190       200       210       220         
pF1KB8 IRVKDSLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCF
         . ....: .:   : :. ..: : ... .:..     :::::  ..  .:. . .. .
CCDS46 GTIVNQIVCKECKNVSERQEDFLDLTVAVKNVSG-----LEDALWNMYVEEEVFDCDNLY
         180       190       200            210       220       230

      230       240       250       260           270       280    
pF1KB8 -CENCGKKTRGKQVLKLTHLPQTLTIHLMRFS---IRNSQTRKI-CHSLYFPQSLDFSQI
        : .: . ... .  :: .::  ::. :.::.   ..  . ..  :..  ::  ....  
CCDS46 HCGTCDRLVKAAKSAKLRKLPPFLTVSLLRFNFDFVKCERYKETSCYT--FPLRINLK--
              240       250       260       270         280        

          290       300         310       320         330       340
pF1KB8 LPMKRESCDAEEQSGGQY--ELFAVIAHVGMADSGHYCVYIRNAVD--GKWFCFNDSNIC
        :.    :.  : .  .:  .::.:: : :   .::: :::.. ::  :.:   ....  
CCDS46 -PF----CEQSELDDLEYIYDLFSVIIHKGGCYGGHYHVYIKD-VDHLGNWQFQEEKSKP
             290       300       310       320        330       340

              350       360       370                              
pF1KB8 LVSWEDIQCTYGNPNYHWQETAYLLVYMKMEC                            
        :. .:.:                                                    
CCDS46 DVNLKDLQSEEEIDHPLMILKAILLEENNLIPVDQLGQKLLKKIGISWNKKYRKQHGPLR
              350       360       370       380       390       400

>>CCDS43892.1 USP20 gene_id:10868|Hs108|chr9              (914 aa)
 initn: 261 init1: 153 opt: 286  Z-score: 330.6  bits: 71.1 E(32554): 4.3e-12
Smith-Waterman score: 286; 34.9% identity (57.7% similar) in 149 aa overlap (205-352:535-677)

          180       190       200       210       220       230    
pF1KB8 SLICVDCAMESSRNSSMLTLPLSLFDVDSKPLKTLEDALHCFFQPRELSSKSKCFCENCG
                                     :. :::: :  ::   ::.. .   :: : 
CCDS43 DSYAAQGWLAFIVEYIRRFVVSCTPSWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCK
          510       520       530       540       550       560    

          240       250       260       270        280       290   
pF1KB8 KKTRGKQVLKLTHLPQTLTIHLMRFSIRNSQTRKICHSLYFP-QSLDFSQILPMKRESCD
       :   : .  :. .::. : ::: ::  .   . ::   . :: ..::.    :.  . : 
CCDS43 KLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLR---PFLAKECT
          570       580       590       600       610          620 

           300       310       320       330       340       350   
pF1KB8 AEEQSGGQYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGN
       ..  .   :.:..:: : : : :::: .: .:...:.:. :.:. .  :    .: . : 
CCDS43 SQITT---YDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEGY
                630       640       650       660       670        

           360       370                                           
pF1KB8 PNYHWQETAYLLVYMKMEC                                         
                                                                   
CCDS43 VLFYRKSSEEAMRERQQVVSLAAMREPSLLRFYVSREWLNKFNTFAEPGPITNQTFLCSH
      680       690       700       710       720       730        

>>CCDS14370.1 USP51 gene_id:158880|Hs108|chrX             (711 aa)
 initn: 283 init1: 103 opt: 273  Z-score: 317.0  bits: 68.3 E(32554): 2.4e-11
Smith-Waterman score: 309; 23.8% identity (51.6% similar) in 382 aa overlap (13-352:322-698)

                                 10        20        30        40  
pF1KB8                   MSKAFGLLRQICQSILAESSQSPADLEEKKEEDSNMKREQPR
                                     :.... . ..  .  : ::.. .. . . .
CCDS14 VYDKDIEQIAKETKEKILRLLTSTSTDVSHQQFMTSGFEDKQSTCETKEQEPKLVKPKKK
             300       310       320       330       340       350 

             50        60        70           80        90         
pF1KB8 ERPRAWDYPHGLVGLHNIGQTCCLNSLIQVFV---MNVDFTRILKRITVPRGADEQRRSV
       .: ..  :  :: :: :.:.:: .: ..:...   .  ::    :.  .          .
CCDS14 RRKKSV-YTVGLRGLINLGNTCFMNCIVQALTHIPLLKDFFLSDKHKCI---MTSPSLCL
              360       370       380       390          400       

     100       110       120         130       140       150       
pF1KB8 PFQMLLLLEKMQDSRQKAVRPLELAYCL--QKCNVPLFVQHDAAQLYLKLWNLIKDQITD
         .:  :.. : .. .    : .: . .  .  ..  . :.:: .. . . .... .  :
CCDS14 VCEMSSLFHAMYSGSRTPHIPYKLLHLIWIHAEHLAGYRQQDAHEFLIAILDVLHRHSKD
       410       420       430       440       450       460       

       160                 170       180       190           200   
pF1KB8 VHLVER----------LQALYTIRVKDSLICVDCAMESSRNSSM----LTLPLSLFDVDS
           ..          .. ..:  ..... :  :   :.  .      : :: :    ::
CCDS14 DSGGQEANNPNCCNCIIDQIFTGGLQSDVTCQACHSVSTTIDPCWDISLDLPGSCATFDS
       470       480       490       500       510       520       

                           210       220       230       240       
pF1KB8 K-P---------------LKTLEDALHCFFQPRELSSKSKCFCENCGKKTRGKQVLKLTH
       . :               . .: : :. : .:..:.:..:  :..: .  .. . : . .
CCDS14 QNPERADSTVSRDDHIPGIPSLTDCLQWFTRPEHLGSSAKIKCNSCQSYQESTKQLTMKK
       530       540       550       560       570       580       

       250       260       270       280       290              300
pF1KB8 LPQTLTIHLMRFSIRNSQTRKICHSLYFPQSLDFSQILPMKRESCDAEEQ-------SGG
       :: .  .:: ::   ..: :::   . ::  ::.. .:   .::   : :       . .
CCDS14 LPIVACFHLKRFEHVGKQRRKINTFISFPLELDMTPFLASTKESRMKEGQPPTDCVPNEN
       590       600       610       620       630       640       

              310       320       330       340       350       360
pF1KB8 QYELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYGNPNYHWQE
       .: ::::: : :  .::::  .::.  : .::  .:. :  .. ::.  . :        
CCDS14 KYSLFAVINHHGTLESGHYTSFIRQQKD-QWFSCDDAIITKATIEDLLYSEGYLLFYHKQ
       650       660       670        680       690       700      

              370  
pF1KB8 TAYLLVYMKMEC
                   
CCDS14 GLEKD       
        710        




372 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:59:36 2016 done: Fri Nov  4 14:59:36 2016
 Total Scan time:  2.820 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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