FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8738, 111 aa
  1>>>pF1KB8738 111 - 111 aa - 111 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8621+/-0.000532; mu= 13.6001+/- 0.032
 mean_var=65.5988+/-13.051, 0's: 0 Z-trim(114.2): 10  B-trim: 0 in 0/51
 Lambda= 0.158353
 statistics sampled from 14794 (14804) to 14794 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.455), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS14508.1 BEX3 gene_id:27018|Hs108|chrX          ( 111)  798 189.5 3.5e-49
CCDS14509.1 BEX3 gene_id:27018|Hs108|chrX          ( 101)  732 174.4 1.1e-44
CCDS35350.1 BEX5 gene_id:340542|Hs108|chrX         ( 111)  406 100.0 3.2e-22
CCDS35355.1 BEX4 gene_id:56271|Hs108|chrX          ( 120)  371 92.0 8.7e-20
CCDS35354.1 BEX1 gene_id:55859|Hs108|chrX          ( 125)  263 67.3 2.4e-12


>>CCDS14508.1 BEX3 gene_id:27018|Hs108|chrX               (111 aa)
 initn: 798 init1: 798 opt: 798  Z-score: 996.4  bits: 189.5 E(32554): 3.5e-49
Smith-Waterman score: 798; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)

               10        20        30        40        50        60
pF1KB8 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
               10        20        30        40        50        60

               70        80        90       100       110 
pF1KB8 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
               70        80        90       100       110 

>>CCDS14509.1 BEX3 gene_id:27018|Hs108|chrX               (101 aa)
 initn: 732 init1: 732 opt: 732  Z-score: 915.4  bits: 174.4 E(32554): 1.1e-44
Smith-Waterman score: 732; 100.0% identity (100.0% similar) in 101 aa overlap (11-111:1-101)

               10        20        30        40        50        60
pF1KB8 MANIHQENEEMEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14           MEQPMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQINDGM
                         10        20        30        40        50

               70        80        90       100       110 
pF1KB8 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
               60        70        80        90       100 

>>CCDS35350.1 BEX5 gene_id:340542|Hs108|chrX              (111 aa)
 initn: 393 init1: 188 opt: 406  Z-score: 512.4  bits: 100.0 E(32554): 3.2e-22
Smith-Waterman score: 406; 57.0% identity (73.7% similar) in 114 aa overlap (1-111:1-111)

               10         20        30        40        50         
pF1KB8 MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGNRRGQARRLAPNFRWAIPNRQIN--
       : :. .::. .:. :.::  :   ::::: ..:.:: .:     ::.:   .::: ..  
CCDS35 MENVPKENKVVEKAPVQN--EAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNI
               10          20        30        40        50        

        60        70        80        90       100       110 
pF1KB8 DGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHDEFCLMP
       : . ::::::: :::::::.:::.::::::  ::::.:.   ::::::::::::
CCDS35 DMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGD-PPHHDHHDEFCLMP
       60        70        80        90        100       110 

>>CCDS35355.1 BEX4 gene_id:56271|Hs108|chrX               (120 aa)
 initn: 394 init1: 131 opt: 371  Z-score: 468.7  bits: 92.0 E(32554): 8.7e-20
Smith-Waterman score: 371; 55.0% identity (75.7% similar) in 111 aa overlap (3-111:16-120)

                            10         20        30         40     
pF1KB8              MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAP
                      : .::::  :: : :: ::.: ::::::..:.:: :::..:::.:
CCDS35 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KB8 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
       :::::::::.:. . . :  :.: :. .: ::.:: :: :.:. .:.   : .::.:   
CCDS35 NFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD---
               70          80        90       100       110        

         110 
pF1KB8 EFCLMP
        :::.:
CCDS35 -FCLIP
          120

>>CCDS35354.1 BEX1 gene_id:55859|Hs108|chrX               (125 aa)
 initn: 239 init1: 105 opt: 263  Z-score: 335.1  bits: 67.3 E(32554): 2.4e-12
Smith-Waterman score: 263; 43.4% identity (62.8% similar) in 113 aa overlap (1-111:14-125)

                            10        20         30         40     
pF1KB8              MANIHQENEEMEQPMQNGEE-DRPLGGGEGHQPAGNRRG-QARRLAP
                    : : .::::: ::  ..::    :: .::   : ::::  ..:.   
CCDS35 MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYCVPRGNRRRFRVRQPIL
               10        20        30        40        50        60

          50        60        70        80        90       100     
pF1KB8 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
       ..:: . .:  .       ..:: . ::.:.. .:::: :: . :: .  .   ::::::
CCDS35 QYRWDMMHRLGEPQARMREENMERIGEEVRQLMEKLREKQLSHSLRAVSTD-PPHHDHHD
               70        80        90       100       110          

         110 
pF1KB8 EFCLMP
       ::::::
CCDS35 EFCLMP
     120     




111 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:06:11 2016 done: Fri Nov  4 15:06:11 2016
 Total Scan time:  1.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]