FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8741, 139 aa
  1>>>pF1KB8741 139 - 139 aa - 139 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5214+/-0.000594; mu= 7.2796+/- 0.036
 mean_var=94.7652+/-18.791, 0's: 0 Z-trim(115.2): 7  B-trim: 387 in 1/51
 Lambda= 0.131750
 statistics sampled from 15746 (15752) to 15746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.484), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS246.1 PNRC2 gene_id:55629|Hs108|chr1           ( 139)  950 189.2   7e-49
CCDS5018.1 PNRC1 gene_id:10957|Hs108|chr6          ( 327)  295 64.9 4.4e-11


>>CCDS246.1 PNRC2 gene_id:55629|Hs108|chr1                (139 aa)
 initn: 950 init1: 950 opt: 950  Z-score: 991.0  bits: 189.2 E(32554): 7e-49
Smith-Waterman score: 950; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB8 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
               70        80        90       100       110       120

              130         
pF1KB8 PSDKEIMTFQLKTLLKVQV
       :::::::::::::::::::
CCDS24 PSDKEIMTFQLKTLLKVQV
              130         

>>CCDS5018.1 PNRC1 gene_id:10957|Hs108|chr6               (327 aa)
 initn: 271 init1: 186 opt: 295  Z-score: 312.4  bits: 64.9 E(32554): 4.4e-11
Smith-Waterman score: 295; 39.9% identity (70.6% similar) in 143 aa overlap (1-138:186-326)

                                             10         20         
pF1KB8                               MGGGERYNIPAPQ-SRNVSKNQQ-QLNRQK
                                     :: .:.  .:  :  ...   .: ..::::
CCDS50 GTEGASPDLAPLRPAAPGQTPLRKEVLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQK
         160       170       180       190       200       210     

       30        40        50        60        70         80       
pF1KB8 TKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQNGGKNKNFPNNQSW-NSSLSGPRLLFKS
       .: .    ::.  :..... ...:... . .:.  : : : :...  :: :.   .: . 
CCDS50 SKYNLPLTKITSAKRNENNFWQDSVSS-DRIQKQEK-KPFKNTENIKNSHLKKSAFLTEV
         220       230       240        250        260       270   

        90       100       110       120         130         
pF1KB8 QANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFNPSD--KEIMTFQLKTLLKVQV
       . ..::::::::.::::::::::::::.  . . :.  .:.:. .:::::::: 
CCDS50 SQKENYAGAKFSDPPSPSVLPKPPSHWMGSTVENSNQNRELMAVHLKTLLKVQT
           280       290       300       310       320       




139 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:08:16 2016 done: Fri Nov  4 15:08:17 2016
 Total Scan time:  1.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]