FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8741, 139 aa
  1>>>pF1KB8741 139 - 139 aa - 139 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4171+/-0.000251; mu= 7.8898+/- 0.016
 mean_var=97.1613+/-19.355, 0's: 0 Z-trim(123.0): 13  B-trim: 390 in 1/52
 Lambda= 0.130115
 statistics sampled from 42042 (42055) to 42042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.493), width:  16
 Scan time:  5.560

The best scores are:                                      opt bits E(85289)
XP_016857180 (OMIM: 611882) PREDICTED: proline-ric ( 139)  950 187.0 8.4e-48
NP_060231 (OMIM: 611882) proline-rich nuclear rece ( 139)  950 187.0 8.4e-48
NP_006804 (OMIM: 606714) proline-rich nuclear rece ( 327)  295 64.2 1.8e-10


>>XP_016857180 (OMIM: 611882) PREDICTED: proline-rich nu  (139 aa)
 initn: 950 init1: 950 opt: 950  Z-score: 979.2  bits: 187.0 E(85289): 8.4e-48
Smith-Waterman score: 950; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB8 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
               70        80        90       100       110       120

              130         
pF1KB8 PSDKEIMTFQLKTLLKVQV
       :::::::::::::::::::
XP_016 PSDKEIMTFQLKTLLKVQV
              130         

>>NP_060231 (OMIM: 611882) proline-rich nuclear receptor  (139 aa)
 initn: 950 init1: 950 opt: 950  Z-score: 979.2  bits: 187.0 E(85289): 8.4e-48
Smith-Waterman score: 950; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB8 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MGGGERYNIPAPQSRNVSKNQQQLNRQKTKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NGGKNKNFPNNQSWNSSLSGPRLLFKSQANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFN
               70        80        90       100       110       120

              130         
pF1KB8 PSDKEIMTFQLKTLLKVQV
       :::::::::::::::::::
NP_060 PSDKEIMTFQLKTLLKVQV
              130         

>>NP_006804 (OMIM: 606714) proline-rich nuclear receptor  (327 aa)
 initn: 271 init1: 186 opt: 295  Z-score: 309.1  bits: 64.2 E(85289): 1.8e-10
Smith-Waterman score: 295; 39.9% identity (70.6% similar) in 143 aa overlap (1-138:186-326)

                                             10         20         
pF1KB8                               MGGGERYNIPAPQ-SRNVSKNQQ-QLNRQK
                                     :: .:.  .:  :  ...   .: ..::::
NP_006 GTEGASPDLAPLRPAAPGQTPLRKEVLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQK
         160       170       180       190       200       210     

       30        40        50        60        70         80       
pF1KB8 TKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQNGGKNKNFPNNQSW-NSSLSGPRLLFKS
       .: .    ::.  :..... ...:... . .:.  : : : :...  :: :.   .: . 
NP_006 SKYNLPLTKITSAKRNENNFWQDSVSS-DRIQKQEK-KPFKNTENIKNSHLKKSAFLTEV
         220       230       240        250        260       270   

        90       100       110       120         130         
pF1KB8 QANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFNPSD--KEIMTFQLKTLLKVQV
       . ..::::::::.::::::::::::::.  . . :.  .:.:. .:::::::: 
NP_006 SQKENYAGAKFSDPPSPSVLPKPPSHWMGSTVENSNQNRELMAVHLKTLLKVQT
           280       290       300       310       320       




139 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:08:17 2016 done: Fri Nov  4 15:08:18 2016
 Total Scan time:  5.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]