FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8750, 140 aa
  1>>>pF1KB8750 140 - 140 aa - 140 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3850+/-0.000808; mu= 9.9184+/- 0.048
 mean_var=53.4476+/-10.708, 0's: 0 Z-trim(105.6): 10  B-trim: 14 in 1/49
 Lambda= 0.175433
 statistics sampled from 8514 (8523) to 8514 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.262), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS13150.1 NXT1 gene_id:29107|Hs108|chr20         ( 140)  935 244.4 1.7e-65
CCDS56605.1 NXT2 gene_id:55916|Hs108|chrX          ( 142)  744 196.1 6.1e-51
CCDS14546.1 NXT2 gene_id:55916|Hs108|chrX          ( 197)  744 196.1 8.3e-51
CCDS56606.1 NXT2 gene_id:55916|Hs108|chrX          ( 114)  592 157.6 1.9e-39


>>CCDS13150.1 NXT1 gene_id:29107|Hs108|chr20              (140 aa)
 initn: 935 init1: 935 opt: 935  Z-score: 1289.4  bits: 244.4 E(32554): 1.7e-65
Smith-Waterman score: 935; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
               70        80        90       100       110       120

              130       140
pF1KB8 PSNTVWKIASDCFRFQDWAS
       ::::::::::::::::::::
CCDS13 PSNTVWKIASDCFRFQDWAS
              130       140

>>CCDS56605.1 NXT2 gene_id:55916|Hs108|chrX               (142 aa)
 initn: 738 init1: 738 opt: 744  Z-score: 1028.1  bits: 196.1 E(32554): 6.1e-51
Smith-Waterman score: 744; 75.4% identity (92.8% similar) in 138 aa overlap (3-140:4-141)

                10        20        30        40        50         
pF1KB8  MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLS
          :.::::::::::::::::::.:: ::::::: :.:::.  :::.:::::::: ..:.
CCDS56 MATSLDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALN
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 EFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQA
       .::. :::::::....::::::..:: ::::::::  :.:::.::::. :::::.::::.
CCDS56 NFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQS
               70        80        90       100       110       120

     120       130       140 
pF1KB8 SPSNTVWKIASDCFRFQDWAS 
       .:.::::::::::::::::.: 
CCDS56 TPNNTVWKIASDCFRFQDWSSS
              130       140  

>>CCDS14546.1 NXT2 gene_id:55916|Hs108|chrX               (197 aa)
 initn: 755 init1: 738 opt: 744  Z-score: 1025.6  bits: 196.1 E(32554): 8.3e-51
Smith-Waterman score: 744; 75.4% identity (92.8% similar) in 138 aa overlap (3-140:59-196)

                                           10        20        30  
pF1KB8                             MASVDFKTYVDQACRAAEEFVNVYYTTMDKRR
                                     :.::::::::::::::::::.:: ::::::
CCDS14 SHSSPADRTREEVVTPTLPEHTATRSQMATSLDFKTYVDQACRAAEEFVNIYYETMDKRR
       30        40        50        60        70        80        

             40        50        60        70        80        90  
pF1KB8 RLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVL
       : :.:::.  :::.:::::::: ..:..::. :::::::....::::::..:: ::::::
CCDS14 RALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVL
       90       100       110       120       130       140        

            100       110       120       130       140 
pF1KB8 VVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS 
       ::  :.:::.::::. :::::.::::..:.::::::::::::::::.: 
CCDS14 VVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQDWSSS
      150       160       170       180       190       

>>CCDS56606.1 NXT2 gene_id:55916|Hs108|chrX               (114 aa)
 initn: 602 init1: 592 opt: 592  Z-score: 821.8  bits: 157.6 E(32554): 1.9e-39
Smith-Waterman score: 592; 72.6% identity (92.0% similar) in 113 aa overlap (28-140:1-113)

               10        20        30        40        50        60
pF1KB8 MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSE
                                  :::::: :.:::.  :::.:::::::: ..:..
CCDS56                            MDKRRRALTRLYLDKATLIWNGNAVSGLDALNN
                                          10        20        30   

               70        80        90       100       110       120
pF1KB8 FFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQAS
       ::. :::::::....::::::..:: ::::::::  :.:::.::::. :::::.::::..
CCDS56 FFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQST
            40        50        60        70        80        90   

              130       140 
pF1KB8 PSNTVWKIASDCFRFQDWAS 
       :.::::::::::::::::.: 
CCDS56 PNNTVWKIASDCFRFQDWSSS
           100       110    




140 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:13:30 2016 done: Fri Nov  4 15:13:30 2016
 Total Scan time:  1.620 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]