FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8752, 190 aa
  1>>>pF1KB8752 190 - 190 aa - 190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3620+/-0.000586; mu= 14.2843+/- 0.036
 mean_var=78.9715+/-15.813, 0's: 0 Z-trim(113.7): 7  B-trim: 0 in 0/51
 Lambda= 0.144324
 statistics sampled from 14294 (14297) to 14294 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.439), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS2879.1 SPATA12 gene_id:353324|Hs108|chr3       ( 190) 1315 282.1 1.4e-76


>>CCDS2879.1 SPATA12 gene_id:353324|Hs108|chr3            (190 aa)
 initn: 1315 init1: 1315 opt: 1315  Z-score: 1488.4  bits: 282.1 E(32554): 1.4e-76
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB8 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV
              130       140       150       160       170       180

              190
pF1KB8 YSNTHIHTHL
       ::::::::::
CCDS28 YSNTHIHTHL
              190




190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:15:17 2016 done: Fri Nov  4 15:15:17 2016
 Total Scan time:  2.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]