FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8752, 190 aa
  1>>>pF1KB8752 190 - 190 aa - 190 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6405+/-0.000265; mu= 12.5928+/- 0.017
 mean_var=81.7439+/-16.239, 0's: 0 Z-trim(121.1): 2  B-trim: 33 in 1/54
 Lambda= 0.141856
 statistics sampled from 37230 (37271) to 37230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.437), width:  16
 Scan time:  6.340

The best scores are:                                      opt bits E(85289)
NP_859078 (OMIM: 609869) spermatogenesis-associate ( 190) 1315 277.7 8.1e-75
XP_011531978 (OMIM: 609869) PREDICTED: spermatogen ( 190) 1315 277.7 8.1e-75


>>NP_859078 (OMIM: 609869) spermatogenesis-associated pr  (190 aa)
 initn: 1315 init1: 1315 opt: 1315  Z-score: 1464.2  bits: 277.7 E(85289): 8.1e-75
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB8 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_859 VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV
              130       140       150       160       170       180

              190
pF1KB8 YSNTHIHTHL
       ::::::::::
NP_859 YSNTHIHTHL
              190

>>XP_011531978 (OMIM: 609869) PREDICTED: spermatogenesis  (190 aa)
 initn: 1315 init1: 1315 opt: 1315  Z-score: 1464.2  bits: 277.7 E(85289): 8.1e-75
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB8 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIHNSTPQFLGMEDGDNERTTGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTV
              130       140       150       160       170       180

              190
pF1KB8 YSNTHIHTHL
       ::::::::::
XP_011 YSNTHIHTHL
              190




190 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:15:18 2016 done: Fri Nov  4 15:15:19 2016
 Total Scan time:  6.340 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]