Result of FASTA (ccds) for
pF1KB8753
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8753, 196 aa
1>>>pF1KB8753 196 - 196 aa - 196 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2842+/-0.000799; mu= 13.4696+/- 0.048
mean_var=77.3551+/-16.325, 0's: 0 Z-trim(108.6): 119 B-trim: 437 in 2/48
Lambda= 0.145824
statistics sampled from 10157 (10300) to 10157 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.316), width: 16
Scan time: 1.830
The best scores are: opt bits E(32554)
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 1288 280.0 6.5e-76
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 514 117.1 6.6e-27
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 472 108.3 2.8e-24
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 466 107.0 7e-24
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 455 104.7 3.5e-23
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 454 104.5 4.3e-23
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 450 103.7 7.1e-23
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 449 103.5 8.3e-23
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 449 103.5 8.7e-23
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 443 102.2 2e-22
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 440 101.6 3.3e-22
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 432 99.9 9.8e-22
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 427 98.8 2e-21
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 418 96.9 7.6e-21
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 413 95.9 1.7e-20
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 415 96.7 2.9e-20
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 405 94.2 5e-20
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 382 89.4 1.4e-18
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 388 91.0 1.5e-18
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 360 85.1 8.4e-17
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 354 83.5 8.8e-17
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 348 82.1 1.7e-16
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 348 82.2 2.1e-16
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 347 82.0 2.4e-16
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 332 78.9 2.3e-15
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 325 77.7 1.1e-14
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 314 75.0 2.8e-14
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 304 72.9 1e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 306 73.4 1e-13
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 302 72.6 1.8e-13
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 290 70.0 8.7e-13
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 290 70.1 1.2e-12
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 286 69.2 1.9e-12
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 279 67.6 4.1e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 273 66.4 1e-11
>>CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 (196 aa)
initn: 1288 init1: 1288 opt: 1288 Z-score: 1476.4 bits: 280.0 E(32554): 6.5e-76
Smith-Waterman score: 1288; 99.5% identity (99.5% similar) in 196 aa overlap (1-196:1-196)
10 20 30 40 50 60
pF1KB8 MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ANKQEAPDALPLLKIRNRLSLERFQDHRWELRGCSALTGEGLPEALQSLWSLLKSRSCMC
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS94 ANKQEAPDALPLLKIRNRLSLERFQDHCWELRGCSALTGEGLPEALQSLWSLLKSRSCMC
130 140 150 160 170 180
190
pF1KB8 LQARAHGAERGDSKRS
::::::::::::::::
CCDS94 LQARAHGAERGDSKRS
190
>>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 (192 aa)
initn: 530 init1: 416 opt: 514 Z-score: 596.5 bits: 117.1 E(32554): 6.6e-27
Smith-Waterman score: 514; 45.8% identity (76.8% similar) in 177 aa overlap (1-175:1-177)
10 20 30 40 50
pF1KB8 MGSVNSRGHKA-EAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSL
:::..:.. .. .:::...:::::::.::::::: . . :.::.::::: .. ..::
CCDS31 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 TLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLV
:.:::::: .:. : : :.:: ::::.::::. :: :: .. ..:.. .. .:: ..
CCDS31 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 LANKQEAPDALPLLKIRNRLSLERF-QDHRWELRGCSALTGEGLPEALQSLWSLLKSRSC
:::::. : :: : ...... .:. : .. : ::::::: .....: ...::
CCDS31 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK
130 140 150 160 170 180
180 190
pF1KB8 MCLQARAHGAERGDSKRS
CCDS31 SRGDTLAFFKQN
190
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 461 init1: 308 opt: 472 Z-score: 549.3 bits: 108.3 E(32554): 2.8e-24
Smith-Waterman score: 472; 44.6% identity (72.3% similar) in 177 aa overlap (1-175:1-175)
10 20 30 40 50
pF1KB8 MGSVNSR--GHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVS
::.: :. :.: : ...:.:::.:::::.::::: : : :.:::::::: . .:.
CCDS96 MGKVLSKIFGNK-EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYK-NVK
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFL
...:::::: .: :. : ::. :..:.: .:. :. :. :: ...:: .: . .:
CCDS96 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VLANKQEAPDALPLLKIRNRLSLERFQDHRWELRGCSALTGEGLPEALQSLWSLLKSRSC
..::::. :::. .:...:.: :..:. : .. : .:.:: :.: : : ::
CCDS96 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
120 130 140 150 160 170
180 190
pF1KB8 MCLQARAHGAERGDSKRS
>>CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 (182 aa)
initn: 440 init1: 341 opt: 466 Z-score: 542.2 bits: 107.0 E(32554): 7e-24
Smith-Waterman score: 466; 42.1% identity (79.2% similar) in 159 aa overlap (12-170:17-172)
10 20 30 40 50
pF1KB8 MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPG
:......:::.::::::: .: .... . :: :::.. ... :
CCDS75 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 HVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGV
.:..::.::: .: ::.:.:.::::.::.::.:. :. :.. ::.:.:.. ... :
CCDS75 F-KLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCV
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PFLVLANKQEAPDALPLLKIRNRLSLERFQDHRWELRGCSALTGEGLPEALQSLWSLLKS
: :..::::. : : .: . :.:. ..:. :....::::::::. .... :
CCDS75 PVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMN--WVCKNV
120 130 140 150 160 170
180 190
pF1KB8 RSCMCLQARAHGAERGDSKRS
CCDS75 NAKKK
180
>>CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 (184 aa)
initn: 454 init1: 335 opt: 455 Z-score: 529.7 bits: 104.7 E(32554): 3.5e-23
Smith-Waterman score: 455; 42.4% identity (75.2% similar) in 165 aa overlap (12-176:16-179)
10 20 30 40 50
pF1KB8 MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGH
: ...:.:::.:::::.: :..:... ::.:::.. :. :
CCDS80 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 VSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVP
.:..:::::: ::. :..:.:.:: :..:.::.:. :. . :: .: . .::.
CCDS80 -KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FLVLANKQEAPDALPLLKIRNRLSLERFQDHRWELRGCSALTGEGLPEALQSLWSLLKSR
.:..::::. : :: ::. : :. ...:.: ..::::.:::.: ... : . ..::
CCDS80 LLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR
120 130 140 150 160 170
180 190
pF1KB8 SCMCLQARAHGAERGDSKRS
CCDS80 IFTAD
180
>>CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 (201 aa)
initn: 458 init1: 246 opt: 454 Z-score: 528.0 bits: 104.5 E(32554): 4.3e-23
Smith-Waterman score: 454; 40.9% identity (70.2% similar) in 198 aa overlap (1-190:1-197)
10 20 30 40 50
pF1KB8 MGSVNSRGHKAEA-QVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLK-----AP
::...: .. ..::.:::::::::.::.:: ...:.:.::.:::.: .: :
CCDS63 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAG
: .: .:::::: :: ::.: . :: ..::.::.: :: :. .:: .: . . :
CCDS63 G-ISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQG
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VPFLVLANKQEAPDALPLLKIRNRLSL-ERFQDHRWELRGCSALTGEGLPEALQSLWSL-
.:.::.::::. : .::. .:...:.: : . .... :. :::: :....:. .
CCDS63 TPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMI
120 130 140 150 160 170
180 190
pF1KB8 LKSRSCMCLQARAHGAERGDSKRS
:: :. . . . : :
CCDS63 LKRRKSLKQKKKRTGDLRSCEV
180 190 200
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 416 init1: 284 opt: 450 Z-score: 524.1 bits: 103.7 E(32554): 7.1e-23
Smith-Waterman score: 450; 40.1% identity (76.6% similar) in 167 aa overlap (10-176:15-180)
10 20 30 40 50
pF1KB8 MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPG
: . ...:.:::.:::::.::::: ..: :.::.::::: ..
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 HVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGV
.. .:.:::::: .: :. :...:. :..:.::.:. :. ::: :: ..:.. .. .
CCDS34 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PFLVLANKQEAPDALPLLKIRNRLSLERFQDHRWELRGCSALTGEGLPEALQSLWSLLKS
.::.::::. :.:.:. .. ..:.:...... : ... : : :: ..:. : :..
CCDS34 VLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK
120 130 140 150 160 170
180 190
pF1KB8 RSCMCLQARAHGAERGDSKRS
:
CCDS34 R
180
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 423 init1: 277 opt: 449 Z-score: 522.9 bits: 103.5 E(32554): 8.3e-23
Smith-Waterman score: 449; 40.7% identity (75.4% similar) in 167 aa overlap (10-176:15-180)
10 20 30 40 50
pF1KB8 MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPG
: : ...:.:::.:::::.::::: ..: :.::.::::: ..
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 HVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGV
..:.:.:::::: .: :. :...:. :..:.::.:. :. :. :: ..: . .. .
CCDS87 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PFLVLANKQEAPDALPLLKIRNRLSLERFQDHRWELRGCSALTGEGLPEALQSLWSLLKS
.::.::::. :.:. .: ..:.:. .. . : ... : .:.:: :.:. : . ::.
CCDS87 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKN
120 130 140 150 160 170
180 190
pF1KB8 RSCMCLQARAHGAERGDSKRS
.
CCDS87 KK
180
>>CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 (192 aa)
initn: 458 init1: 246 opt: 449 Z-score: 522.6 bits: 103.5 E(32554): 8.7e-23
Smith-Waterman score: 449; 42.2% identity (72.2% similar) in 187 aa overlap (1-179:1-186)
10 20 30 40 50
pF1KB8 MGSVNSRGHKAEA-QVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLK-----AP
::...: .. ..::.:::::::::.::.:: ...:.:.::.:::.: .: :
CCDS25 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GHVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAG
: .: .:::::: :: ::.: . :: ..::.::.: :: :. .:: .: . . :
CCDS25 G-ISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQG
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VPFLVLANKQEAPDALPLLKIRNRLSL-ERFQDHRWELRGCSALTGEGLPEALQSLWSL-
.:.::.::::. : .::. .:...:.: : . .... :. :::: :....:. .
CCDS25 TPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMI
120 130 140 150 160 170
180 190
pF1KB8 LKSRSCMCLQARAHGAERGDSKRS
:: :. .
CCDS25 LKRRKSLKQKKKR
180 190
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 412 init1: 266 opt: 443 Z-score: 516.1 bits: 102.2 E(32554): 2e-22
Smith-Waterman score: 443; 40.1% identity (75.4% similar) in 167 aa overlap (10-176:15-180)
10 20 30 40 50
pF1KB8 MGSVNSRGHKAEAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPG
: : ...:.:::.:::::.::::: ..: :.::.::::: ..
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 HVSLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGV
..:.:.:::::: .: :. :...:. :..:.::.:. :. :. :: ..: . .. .
CCDS15 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PFLVLANKQEAPDALPLLKIRNRLSLERFQDHRWELRGCSALTGEGLPEALQSLWSLLKS
.::.::::. :.:. .: ..:.:. .. . : ... : .:.:: :.:. : . :..
CCDS15 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN
120 130 140 150 160 170
180 190
pF1KB8 RSCMCLQARAHGAERGDSKRS
.
CCDS15 QK
180
196 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:16:04 2016 done: Fri Nov 4 15:16:04 2016
Total Scan time: 1.830 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]