Result of FASTA (ccds) for
pF1KB8757
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8757, 201 aa
1>>>pF1KB8757 201 - 201 aa - 201 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2248+/-0.000856; mu= 14.1179+/- 0.052
mean_var=87.9770+/-18.383, 0's: 0 Z-trim(107.5): 175 B-trim: 8 in 1/51
Lambda= 0.136738
statistics sampled from 9433 (9638) to 9433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.296), width: 16
Scan time: 2.010
The best scores are: opt bits E(32554)
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 1294 264.9 2.4e-71
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 819 171.2 3.8e-43
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 770 161.5 3e-40
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 770 161.5 3.1e-40
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 500 108.3 3.2e-24
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 474 103.1 1.1e-22
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 470 102.3 1.9e-22
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 465 101.3 3.7e-22
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 452 98.7 2.1e-21
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 452 98.8 2.2e-21
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 453 99.4 4.4e-21
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 440 96.4 1.2e-20
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 410 90.5 6.8e-19
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 413 91.5 1e-18
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 405 89.5 1.4e-18
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 391 86.7 9.3e-18
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 383 85.6 6.1e-17
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 376 83.8 7.2e-17
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 370 82.6 1.6e-16
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 332 75.1 3e-14
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 321 72.9 1.4e-13
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 317 72.2 2.5e-13
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 320 73.1 2.8e-13
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 305 69.8 1.2e-12
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 297 68.2 3.5e-12
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 296 68.0 4.3e-12
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 291 67.0 8.5e-12
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 286 66.0 1.5e-11
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 287 66.3 1.7e-11
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 284 65.5 1.8e-11
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 281 65.1 3.4e-11
>>CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 (201 aa)
initn: 1294 init1: 1294 opt: 1294 Z-score: 1394.5 bits: 264.9 E(32554): 2.4e-71
Smith-Waterman score: 1294; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
130 140 150 160 170 180
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
:::::::::::::::::::::
CCDS11 ERLYEMILKRKKAARGGKKRR
190 200
>>CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 (200 aa)
initn: 818 init1: 800 opt: 819 Z-score: 888.1 bits: 171.2 E(32554): 3.8e-43
Smith-Waterman score: 819; 60.2% identity (86.1% similar) in 201 aa overlap (1-201:1-200)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
::: :.... :. :: ::..:.:..::: ::::..::::.:.:::..:::::::::::
CCDS53 MGNGLSDQTSILSN-LPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
.: ::.:. .::. :::::::::::::.:::: :::.:::::....::.::::.:::.:.
CCDS53 KVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKIT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
: :.:::::::..::::: ..:: .:.:: ::. ::...: :.: :. : ::..::
CCDS53 RISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGL
120 130 140 150 160 170
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
:.:..::.::.: : ::.:
CCDS53 EKLHDMIIKRRKMLRQQKKKR
180 190 200
>>CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 (192 aa)
initn: 770 init1: 770 opt: 770 Z-score: 836.1 bits: 161.5 E(32554): 3e-40
Smith-Waterman score: 770; 59.0% identity (85.6% similar) in 188 aa overlap (13-200:5-192)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
:: . ::.::.:..::::::::..::::::.:::..::: :::::::
CCDS25 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
.. : ..::. . :::::::::::::.::.: :::...:::.....::::::.:::...
CCDS25 KLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
. ..:::.:.::.::::: : .: .::.::.::..:: :: ::: :. : :: .:.
CCDS25 KFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGM
120 130 140 150 160 170
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
..::::::::.:. . :::
CCDS25 DKLYEMILKRRKSLKQKKKR
180 190
>>CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 (201 aa)
initn: 770 init1: 770 opt: 770 Z-score: 835.8 bits: 161.5 E(32554): 3.1e-40
Smith-Waterman score: 770; 59.0% identity (85.6% similar) in 188 aa overlap (13-200:5-192)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
:: . ::.::.:..::::::::..::::::.:::..::: :::::::
CCDS63 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
.. : ..::. . :::::::::::::.::.: :::...:::.....::::::.:::...
CCDS63 KLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
. ..:::.:.::.::::: : .: .::.::.::..:: :: ::: :. : :: .:.
CCDS63 KFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGM
120 130 140 150 160 170
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
..::::::::.:. . :::
CCDS63 DKLYEMILKRRKSLKQKKKRTGDLRSCEV
180 190 200
>>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 (192 aa)
initn: 489 init1: 354 opt: 500 Z-score: 548.2 bits: 108.3 E(32554): 3.2e-24
Smith-Waterman score: 500; 42.2% identity (74.4% similar) in 180 aa overlap (17-196:9-183)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
:. . .:...:::::::..:::.::. . . ..:: :::.: :
CCDS31 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMI
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
.. :.... :::::::::.: .: : . :::::.:::... .::::.. ....:
CCDS31 EL----ERNLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHIL
60 70 80 90 100
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
. ..:::..::::::.::::.: .. . . :..: . .:: : :. : :: ::.
CCDS31 KNEHIKNVPVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGF
110 120 130 140 150 160
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
..: .. : . .::
CCDS31 RKLTGFV-KSHMKSRGDTLAFFKQN
170 180 190
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 448 init1: 289 opt: 474 Z-score: 520.8 bits: 103.1 E(32554): 1.1e-22
Smith-Waterman score: 474; 43.4% identity (75.7% similar) in 173 aa overlap (20-192:16-181)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
. ......:::.::::..::.::. :.: ..:: :::.: .
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
. ..:.: :::::::.:.::::: : . :.::.::::. . ::..::. :: :.
CCDS87 EY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
.. . . .::.::::: :.:..:::. .:... : . ..:. :..: :: .::
CCDS87 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW-YIQATCATSGDGLYEGL
120 130 140 150 160 170
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
. : .. :: ::
CCDS87 DWLANQ-LKNKK
180
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 446 init1: 289 opt: 470 Z-score: 516.6 bits: 102.3 E(32554): 1.9e-22
Smith-Waterman score: 470; 41.9% identity (76.2% similar) in 172 aa overlap (20-191:16-181)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
. ......:::.::::..::.::. :.: ..:: :::.: .
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
. ..:.: :::::::.:.::::: : . :.::.::::. . ::..::. :: :.
CCDS15 EY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
.. . . .::.::::: :.:..:::. .:... : . ..:. :..: :: .::
CCDS15 AEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNW-YIQATCATSGDGLYEGL
120 130 140 150 160 170
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
. : ... ..:
CCDS15 DWLSNQLRNQK
180
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 458 init1: 275 opt: 465 Z-score: 511.3 bits: 101.3 E(32554): 3.7e-22
Smith-Waterman score: 465; 41.5% identity (76.6% similar) in 171 aa overlap (20-190:16-180)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
. ......:::.::::..::.::. :.: ..:: :::.: .
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
. ..: : :::::::.:.::::: : . :.::.::::. . ::..:. ::...
CCDS34 EY-----KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKML
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
. .. . . .::.:::::.:.:. ..:. .:....: . : .::. :..: :: .::
CCDS34 QEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTW-YVQATCATQGTGLYDGL
120 130 140 150 160 170
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
. : . . ::
CCDS34 DWLSHELSKR
180
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 450 init1: 292 opt: 452 Z-score: 497.6 bits: 98.7 E(32554): 2.1e-21
Smith-Waterman score: 452; 41.5% identity (72.6% similar) in 164 aa overlap (20-183:12-169)
10 20 30 40 50 60
pF1KB8 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
. ......:::.::::..::.::. . : ..:: :::.: .
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
... :.:::::::.:.::::: : :.::.:::: :. .:..::. :::::
CCDS96 TY-----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRII
60 70 80 90 100
130 140 150 160 170 180
pF1KB8 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
. . . .:..::::: : :.. :....:.. .. . .:: :..: :: .::
CCDS96 NDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNW-YVQPSCATSGDGLYEGL
110 120 130 140 150 160
190 200
pF1KB8 ERLYEMILKRKKAARGGKKRR
:
CCDS96 TWLTSNYKS
170
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 442 init1: 257 opt: 452 Z-score: 497.4 bits: 98.8 E(32554): 2.2e-21
Smith-Waterman score: 452; 38.7% identity (73.7% similar) in 186 aa overlap (8-190:1-180)
10 20 30 40 50
pF1KB8 MGNHLTEMAPTASSFLPHF---QALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNT
:. : ::.. .. . ......:::.::::..::.::. :.: ..:: :::.
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 EKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELH
: .. ..: : :::::::...::::. : . :.::.::::. . ::..:. ::.
CCDS28 ETVEY-----KNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQ
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 RISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQ
.. ... . . .:..::::: :.:.. .:. .:... : : .::. :..: ::
CCDS28 KMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTW-YVQATCATQGTGLY
110 120 130 140 150 160
180 190 200
pF1KB8 QGLERLYEMILKRKKAARGGKKRR
.::. : . . ::
CCDS28 EGLDWLSNELSKR
170 180
201 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:19:22 2016 done: Fri Nov 4 15:19:23 2016
Total Scan time: 2.010 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]