FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8770, 234 aa
  1>>>pF1KB8770 234 - 234 aa - 234 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8483+/-0.000806; mu= 11.4542+/- 0.048
 mean_var=71.1634+/-14.522, 0's: 0 Z-trim(107.6): 16  B-trim: 408 in 1/52
 Lambda= 0.152036
 statistics sampled from 9643 (9652) to 9643 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.296), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS3418.1 FGFBP1 gene_id:9982|Hs108|chr4          ( 234) 1548 348.4 2.4e-96


>>CCDS3418.1 FGFBP1 gene_id:9982|Hs108|chr4               (234 aa)
 initn: 1548 init1: 1548 opt: 1548  Z-score: 1843.1  bits: 348.4 E(32554): 2.4e-96
Smith-Waterman score: 1548; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KB8 MKICSLTLLSFLLLAAQVLLVEGKKKVKNGLHSKVVSEQKDTLGNTQIKQKSRPGNKGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKICSLTLLSFLLLAAQVLLVEGKKKVKNGLHSKVVSEQKDTLGNTQIKQKSRPGNKGKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VTKDQANCRWAATEQEEGISLKVECTQLDHEFSCVFAGNPTSCLKLKDERVYWKQVARNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VTKDQANCRWAATEQEEGISLKVECTQLDHEFSCVFAGNPTSCLKLKDERVYWKQVARNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RSQKDICRYSKTAVKTRVCRKDFPESSLKLVSSTLFGNTKPRKEKTEMSPREHIKGKETT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSQKDICRYSKTAVKTRVCRKDFPESSLKLVSSTLFGNTKPRKEKTEMSPREHIKGKETT
              130       140       150       160       170       180

              190       200       210       220       230    
pF1KB8 PSSLAVTQTMATKAPECVEDPDMANQRKTALEFCGETWSSLCTFFLSIVQDTSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PSSLAVTQTMATKAPECVEDPDMANQRKTALEFCGETWSSLCTFFLSIVQDTSC
              190       200       210       220       230    




234 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:26:22 2016 done: Fri Nov  4 15:26:23 2016
 Total Scan time:  2.090 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]