FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8773, 241 aa
  1>>>pF1KB8773 241 - 241 aa - 241 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6695+/-0.000647; mu= 13.9712+/- 0.039
 mean_var=84.2264+/-16.639, 0's: 0 Z-trim(112.8): 10  B-trim: 0 in 0/53
 Lambda= 0.139749
 statistics sampled from 13503 (13509) to 13503 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.415), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS9996.1 CDCA4 gene_id:55038|Hs108|chr14         ( 241) 1641 339.7   1e-93


>>CCDS9996.1 CDCA4 gene_id:55038|Hs108|chr14              (241 aa)
 initn: 1641 init1: 1641 opt: 1641  Z-score: 1795.8  bits: 339.7 E(32554): 1e-93
Smith-Waterman score: 1641; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KB8 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE
              190       200       210       220       230       240

        
pF1KB8 T
       :
CCDS99 T
        




241 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:28:48 2016 done: Fri Nov  4 15:28:48 2016
 Total Scan time:  2.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]