FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8773, 241 aa
  1>>>pF1KB8773 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8279+/-0.00029; mu= 13.2020+/- 0.018
 mean_var=90.0262+/-18.680, 0's: 0 Z-trim(119.6): 11  B-trim: 1438 in 1/57
 Lambda= 0.135173
 statistics sampled from 33785 (33796) to 33785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.396), width:  16
 Scan time:  7.050

The best scores are:                                      opt bits E(85289)
NP_663747 (OMIM: 612270) cell division cycle-assoc ( 241) 1641 329.2 3.9e-90
NP_060425 (OMIM: 612270) cell division cycle-assoc ( 241) 1641 329.2 3.9e-90


>>NP_663747 (OMIM: 612270) cell division cycle-associate  (241 aa)
 initn: 1641 init1: 1641 opt: 1641  Z-score: 1739.1  bits: 329.2 E(85289): 3.9e-90
Smith-Waterman score: 1641; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KB8 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE
              190       200       210       220       230       240

        
pF1KB8 T
       :
NP_663 T
        

>>NP_060425 (OMIM: 612270) cell division cycle-associate  (241 aa)
 initn: 1641 init1: 1641 opt: 1641  Z-score: 1739.1  bits: 329.2 E(85289): 3.9e-90
Smith-Waterman score: 1641; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KB8 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MFARGLKRKCVGHEEDVEGALAGLKTVSSYSLQRQSLLDMSLVKLQLCHMLVEPNLCRSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LIANTVRQIQEEMTQDGTWRTVAPQAAERAPLDRLVSTEILCRAAWGQEGAHPAPGLGDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HTQGPVSDLCPVTSAQAPRHLQSSAWEMDGPRENRGSFHKSLDQIFETLETKNPSCMEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FSDVDSPYYDLDTVLTGMMGGARPGPCEGLEGLAPATPGPSSSCKSDLGELDHVVEILVE
              190       200       210       220       230       240

        
pF1KB8 T
       :
NP_060 T
        




241 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:28:48 2016 done: Fri Nov  4 15:28:50 2016
 Total Scan time:  7.050 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]