FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8775, 247 aa
  1>>>pF1KB8775 247 - 247 aa - 247 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1681+/-0.000773; mu= 16.5924+/- 0.046
 mean_var=100.2465+/-21.262, 0's: 0 Z-trim(110.6): 60  B-trim: 672 in 2/52
 Lambda= 0.128097
 statistics sampled from 11695 (11753) to 11695 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.361), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS4531.1 RNF182 gene_id:221687|Hs108|chr6        ( 247) 1700 324.0 5.7e-89


>>CCDS4531.1 RNF182 gene_id:221687|Hs108|chr6             (247 aa)
 initn: 1700 init1: 1700 opt: 1700  Z-score: 1710.8  bits: 324.0 E(32554): 5.7e-89
Smith-Waterman score: 1700; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)

               10        20        30        40        50        60
pF1KB8 MASQPPEDTAESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MASQPPEDTAESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VIVCPFCRFETCLPDDEVSSLPDDNNILVNLTCGGKGKKCLPENPTELLLTPKRLASLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VIVCPFCRFETCLPDDEVSSLPDDNNILVNLTCGGKGKKCLPENPTELLLTPKRLASLVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PSHTSSNCLVITIMEVQRESSPSLSSTPVVEFYRPASFDSVTTVSHNWTVWNCTSLLFQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PSHTSSNCLVITIMEVQRESSPSLSSTPVVEFYRPASFDSVTTVSHNWTVWNCTSLLFQT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SIRVLVWLLGLLYFSSLPLGIYLLVSKKVTLGVVFVSLVPSSLVILMVYGFCQCVCHEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SIRVLVWLLGLLYFSSLPLGIYLLVSKKVTLGVVFVSLVPSSLVILMVYGFCQCVCHEFL
              190       200       210       220       230       240

              
pF1KB8 DCMAPPS
       :::::::
CCDS45 DCMAPPS
              




247 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:29:21 2016 done: Fri Nov  4 15:29:21 2016
 Total Scan time:  2.340 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]