FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8779, 259 aa
  1>>>pF1KB8779 259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7937+/-0.00096; mu= 12.4845+/- 0.057
 mean_var=92.6594+/-18.649, 0's: 0 Z-trim(107.3): 131  B-trim: 8 in 1/50
 Lambda= 0.133238
 statistics sampled from 9353 (9508) to 9353 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.292), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS2644.1 LRRC3B gene_id:116135|Hs108|chr3        ( 259) 1738 344.1 5.5e-95
CCDS13711.1 LRRC3 gene_id:81543|Hs108|chr21        ( 257)  797 163.3 1.6e-40
CCDS54121.1 LRRC3C gene_id:100505591|Hs108|chr17   ( 275)  546 115.0 5.5e-26


>>CCDS2644.1 LRRC3B gene_id:116135|Hs108|chr3             (259 aa)
 initn: 1738 init1: 1738 opt: 1738  Z-score: 1818.7  bits: 344.1 E(32554): 5.5e-95
Smith-Waterman score: 1738; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KB8 MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNVTCSNANLKEIPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 DLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDEH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AGRPFLNAANDADLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 AGRPFLNAANDADLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEYLK
              190       200       210       220       230       240

              250         
pF1KB8 SLPSRQKKADEPDDISTVV
       :::::::::::::::::::
CCDS26 SLPSRQKKADEPDDISTVV
              250         

>>CCDS13711.1 LRRC3 gene_id:81543|Hs108|chr21             (257 aa)
 initn: 784 init1: 421 opt: 797  Z-score: 841.2  bits: 163.3 E(32554): 1.6e-40
Smith-Waterman score: 797; 48.3% identity (78.1% similar) in 242 aa overlap (11-250:10-251)

               10        20        30        40         50         
pF1KB8 MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSS-SGGLNVTCSNANLKEIP
                 :: .    .: .....:.: .. ::. : : . .:.. : ::  .:.:.:
CCDS13  MGTVRPPRPSLLLVSTRESCLFLLFCLHLGAACPQPCRCPDHAGAVAVFCSLRGLQEVP
                10        20        30        40        50         

      60        70        80        90       100       110         
pF1KB8 RDLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTLD
       .:.: .:::: ::.:.:. .:.  :. ::.:: :.::.:.:: :   .: :.:  :. ::
CCDS13 EDIPANTVLLKLDANKISHLPDGAFQHLHRLRELDLSHNAIEAIGSATFAGLAGGLRLLD
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KB8 LSDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLDE
       :: :::: . :.:...:.:. :...:: ::.:.::..:  .  . ... .. :.::: .:
CCDS13 LSYNRIQRIPKDALGKLSAKIRLSHNPLHCECALQEALWELKLDPDSVDEIACHTSVQEE
     120       130       140       150       160       170         

     180       190        200       210       220       230        
pF1KB8 HAGRPFLNAAN-DADLCNLPKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARRHLEY
        .:.:...: .  :.::..:..::: ::::::::::.:::.:::::::.:::::::::::
CCDS13 FVGKPLVQALDAGASLCSVPHRTTDVAMLVTMFGWFAMVIAYVVYYVRHNQEDARRHLEY
     180       190       200       210       220       230         

      240       250         
pF1KB8 LKSLPSRQKKADEPDDISTVV
       ::::::   . :         
CCDS13 LKSLPSAPASKDPIGPGP   
     240       250          

>>CCDS54121.1 LRRC3C gene_id:100505591|Hs108|chr17        (275 aa)
 initn: 517 init1: 376 opt: 546  Z-score: 580.0  bits: 115.0 E(32554): 5.5e-26
Smith-Waterman score: 546; 37.4% identity (69.8% similar) in 235 aa overlap (30-259:44-275)

                10        20        30        40         50        
pF1KB8  MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSGGLNV-TCSNANLKEI
                                     : .. :.::  .. .:  .  ::.:.:. .
CCDS54 PGLCQFMAMLPTAGHLLPLLLVIGTGGTVPSPQVPPRGCYVAKEAGERTFRCSQAGLSAV
            20        30        40        50        60        70   

       60        70        80        90       100       110        
pF1KB8 PRDLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEFIDEHAFKGVAETLQTL
       :  .: .:  ::::.::..:.:   :. :  :. :.::.:..  ..  ::.:.  ::. :
CCDS54 PSGIPNDTRKLYLDANQLASVPAGAFQHLPVLEELDLSHNALAHLSGAAFQGLEGTLRHL
            80        90       100       110       120       130   

      120       130       140       150       160       170        
pF1KB8 DLSDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSMASNHETAHNVICKTSVLD
       ::: :.. ::  .:: .:. .. .. :::::::.::.:::..     :. ...: ...  
CCDS54 DLSANQLASVPVEAFVGLQIQVNLSANPWHCDCALQEVLRQVRLVPGTGTGIVCGSGARP
           140       150       160       170       180       190   

      180       190           200       210       220       230    
pF1KB8 EHAGRPFLNAANDADLCNL----PKKTTDYAMLVTMFGWFTMVISYVVYYVRQNQEDARR
       . .:. ::  :.. .::.      ...:: :.:::: ::.:....:.:.:: ::....::
CCDS54 DLVGQEFLLLAGEEELCGSGWGGARRSTDVALLVTMGGWLTLMVAYLVHYVWQNRDETRR
           200       210       220       230       240       250   

          240       250         
pF1KB8 HLEYLKSLPSRQKKADEPDDISTVV
        :.    :: :   ... . .::::
CCDS54 SLKRAPVLPVR---SEDSSILSTVV
           260          270     




259 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:32:09 2016 done: Fri Nov  4 15:32:10 2016
 Total Scan time:  1.940 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]