Result of FASTA (omim) for
pF1KB8783
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8783, 277 aa
1>>>pF1KB8783 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8846+/-0.00035; mu= 17.5166+/- 0.022
mean_var=80.6283+/-16.022, 0's: 0 Z-trim(116.7): 402 B-trim: 552 in 1/53
Lambda= 0.142834
statistics sampled from 27650 (28119) to 27650 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.33), width: 16
Scan time: 7.410
The best scores are: opt bits E(85289)
NP_001027004 (OMIM: 300405) ras-related protein Ra ( 278) 1829 386.3 3.4e-107
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 491 110.4 2.7e-24
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 485 109.2 6.5e-24
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 485 109.2 6.7e-24
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 483 108.8 8.7e-24
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 482 108.6 9.8e-24
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 452 102.4 7.2e-22
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 440 99.9 4e-21
NP_004654 (OMIM: 605570) ras-related protein Rab-1 ( 216) 432 98.3 1.3e-20
NP_004209 (OMIM: 604198) ras-related protein Rab-1 ( 218) 431 98.1 1.5e-20
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 424 96.6 3.9e-20
NP_001020471 (OMIM: 616448) ras-related protein Ra ( 244) 423 96.5 5.1e-20
NP_004274 (OMIM: 604350) ras-related protein Rab-3 ( 219) 413 94.4 2e-19
NP_001304844 (OMIM: 612829) ras-related protein Ra ( 225) 413 94.4 2e-19
NP_612462 (OMIM: 612829) ras-related protein Rab-3 ( 227) 413 94.4 2e-19
NP_002858 (OMIM: 179510) ras-related protein Rab-3 ( 219) 407 93.2 4.7e-19
XP_016857447 (OMIM: 179510) PREDICTED: ras-related ( 219) 407 93.2 4.7e-19
XP_011526466 (OMIM: 179490) PREDICTED: ras-related ( 220) 399 91.5 1.5e-18
NP_002857 (OMIM: 179490) ras-related protein Rab-3 ( 220) 399 91.5 1.5e-18
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 391 89.9 5.1e-18
NP_002856 (OMIM: 179509) ras-related protein Rab-2 ( 212) 389 89.4 6e-18
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215) 386 88.8 9.3e-18
NP_116235 (OMIM: 607466) ras-related protein Rab-2 ( 216) 385 88.6 1.1e-17
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223) 385 88.6 1.1e-17
NP_057238 (OMIM: 612945) ras-related protein Rab-4 ( 213) 384 88.4 1.2e-17
NP_001193765 (OMIM: 605570) ras-related protein Ra ( 155) 382 87.9 1.3e-17
NP_001272988 (OMIM: 605693) ras-related protein Ra ( 203) 382 88.0 1.6e-17
NP_055303 (OMIM: 605693) ras-related protein Rab-3 ( 203) 382 88.0 1.6e-17
NP_001272990 (OMIM: 605693) ras-related protein Ra ( 203) 382 88.0 1.6e-17
NP_001272989 (OMIM: 605693) ras-related protein Ra ( 203) 382 88.0 1.6e-17
XP_016873867 (OMIM: 612565) PREDICTED: ras-related ( 237) 378 87.2 3.1e-17
NP_004569 (OMIM: 179511) ras-related protein Rab-4 ( 218) 373 86.1 6e-17
XP_011519339 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 372 86.3 1.2e-16
XP_011519340 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 372 86.3 1.2e-16
NP_001294982 (OMIM: 605455) ras-related protein Ra ( 190) 367 84.9 1.3e-16
NP_001138430 (OMIM: 614178) EF-hand calcium-bindin ( 731) 372 86.5 1.6e-16
XP_011519336 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 372 86.5 1.6e-16
XP_006719084 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 372 86.5 1.6e-16
XP_011519338 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 372 86.5 1.6e-16
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196) 360 83.4 3.6e-16
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228) 360 83.5 4e-16
NP_067075 (OMIM: 602207,614222) ras-related protei ( 206) 359 83.2 4.3e-16
XP_006722363 (OMIM: 616448) PREDICTED: ras-related ( 212) 355 82.4 7.7e-16
NP_783865 (OMIM: 609956) ras-related protein Rab-3 ( 216) 355 82.4 7.8e-16
NP_065120 (OMIM: 612942) ras-related protein Rab-2 ( 213) 348 81.0 2.1e-15
NP_112586 (OMIM: 605950,615222) ras-related protei ( 229) 347 80.8 2.5e-15
XP_011530601 (OMIM: 605950,615222) PREDICTED: ras- ( 277) 347 80.9 2.9e-15
NP_001161078 (OMIM: 604199) ras-related protein Ra ( 152) 343 79.8 3.4e-15
XP_011523392 (OMIM: 604037) PREDICTED: ras-related ( 216) 342 79.8 5e-15
NP_004574 (OMIM: 604037) ras-related protein Rab-5 ( 216) 342 79.8 5e-15
>>NP_001027004 (OMIM: 300405) ras-related protein Rab-40 (278 aa)
initn: 1651 init1: 1651 opt: 1829 Z-score: 2045.4 bits: 386.3 E(85289): 3.4e-107
Smith-Waterman score: 1829; 97.8% identity (99.3% similar) in 278 aa overlap (1-277:1-278)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_001 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGTAESPYSHLGGIDYKTTTILLDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPGVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 KILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGLS
::::::::::::::::::::::::::::::::::: .:::::::::::::::::::::::
NP_001 NWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPIALRSHLKSFSMAKGLNARMMRGLS
190 200 210 220 230 240
250 260 270
pF1KB8 YSLTTSSTHK-SSLCKVEIVCPPQSPPKNCTRNSCKIS
:::::::::: ::::::.::::::::::::::::::::
NP_001 YSLTTSSTHKRSSLCKVKIVCPPQSPPKNCTRNSCKIS
250 260 270
>>NP_002861 (OMIM: 602672) ras-related protein Rab-13 is (203 aa)
initn: 490 init1: 340 opt: 491 Z-score: 557.1 bits: 110.4 E(85289): 2.7e-24
Smith-Waterman score: 491; 43.5% identity (74.7% similar) in 170 aa overlap (9-177:3-172)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
.::: :.:.::.:: :::. .. . . .. : :::.: :. ..:
NP_002 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAP-GV
...::..:::.:: :: :: .: :::.:.::::::... :::... :.:.:.:.: ::
NP_002 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
..:.::. . ::.: .:::. :.. :. :::.: ..:. :.:. ::: .::.
NP_002 ERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
NP_002 GRRSGNGNKPPSTDLKTCDKKNTNKCSLG
180 190 200
>>NP_005361 (OMIM: 165040) ras-related protein Rab-8A [H (207 aa)
initn: 378 init1: 378 opt: 485 Z-score: 550.3 bits: 109.2 E(85289): 6.5e-24
Smith-Waterman score: 485; 45.5% identity (73.9% similar) in 165 aa overlap (9-172:3-167)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
..::.:.:.::.:: :::. .: ... : .: . :::.: :: :::
NP_005 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
.:.::..:::.:: :: :: .: :::.:..:::::.:. ::... ::..::::: . :
NP_005 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
:...::. . :::: .:... : :. :.:.: :.:. ..: :::
NP_005 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
NP_005 KKLEGNSPQGSNQGVKITPDQQKRSSFFRCVLL
180 190 200
>>XP_011526322 (OMIM: 165040) PREDICTED: ras-related pro (215 aa)
initn: 397 init1: 378 opt: 485 Z-score: 550.1 bits: 109.2 E(85289): 6.7e-24
Smith-Waterman score: 485; 45.5% identity (73.9% similar) in 165 aa overlap (9-172:3-167)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
..::.:.:.::.:: :::. .: ... : .: . :::.: :: :::
XP_011 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
.:.::..:::.:: :: :: .: :::.:..:::::.:. ::... ::..::::: . :
XP_011 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
:...::. . :::: .:... : :. :.:.: :.:. ..: :::
XP_011 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
XP_011 KKLGQKDNMVCKDREPWLGEKLPRSLGQGQGWCLITAGSSS
180 190 200 210
>>NP_057614 (OMIM: 613532) ras-related protein Rab-8B [H (207 aa)
initn: 465 init1: 370 opt: 483 Z-score: 548.0 bits: 108.8 E(85289): 8.7e-24
Smith-Waterman score: 483; 42.6% identity (72.7% similar) in 176 aa overlap (9-181:3-178)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
..::.:.:.::.:: :::. .: ... : .. . :::.: :: :::
NP_057 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
...::..:::.:: :: :: .: :::.:..:::::.:. ::... ::..::::: . :
NP_057 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVL--LR
....::. . :::: .:... : :. :.:.: . :. :.: ::: .. :
NP_057 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLN
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 HRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMR
..::
NP_057 RKMNDSNSAGAGGPVKITENRSKKTSFFRCSLL
180 190 200
>>NP_057215 (OMIM: 612672) ras-related protein Rab-10 [H (200 aa)
initn: 467 init1: 370 opt: 482 Z-score: 547.1 bits: 108.6 E(85289): 9.8e-24
Smith-Waterman score: 482; 43.5% identity (74.4% similar) in 168 aa overlap (9-175:4-171)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
..::.:.:.::.:: :::. .: ..: : .. . :::.: :. :.:
NP_057 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHA-PGV
...::..:::.:: :: :: :: :::.:..:::::.: :::....:...:.::: :
NP_057 KKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
..:.::. . :: ::. ... :.. :. :::.: :.:: ..: ::. .:
NP_057 ERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
NP_057 VKEPNSENVDISSGGGVTGWKSKCC
180 190 200
>>NP_004152 (OMIM: 179508) ras-related protein Rab-1A is (205 aa)
initn: 470 init1: 344 opt: 452 Z-score: 513.6 bits: 102.4 E(85289): 7.2e-22
Smith-Waterman score: 452; 40.9% identity (69.3% similar) in 176 aa overlap (6-180:3-176)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
: . ::.:.:.::.:: :::: .: . : . : :.:.: :: :::
NP_004 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAP-GV
. .::..:::.:: :: :: :: :::.:.:.:::.... ::... .:...:...: .:
NP_004 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
:.::::. :. :. : :. .:. ::. :.:.: :. .:: .: . ...:
NP_004 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA--AEIKKR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
:
NP_004 MGPGATAGGAEKSNVKIQSTPVKQSGGGCC
180 190 200
>>NP_112243 (OMIM: 612565) ras-related protein Rab-1B [H (201 aa)
initn: 445 init1: 339 opt: 440 Z-score: 500.3 bits: 99.9 E(85289): 4e-21
Smith-Waterman score: 440; 40.4% identity (69.6% similar) in 171 aa overlap (11-180:5-173)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
::.:.:.::.:: :::: .: . : . : :.:.: :: :::
NP_112 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAP-GV
. .::..:::.:: :: :: :: :::.:.:.:::.... :. .. .:...:...: .:
NP_112 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESFTELARIVLLRHR
:.::::. :. :. : :. .:. ::. :.:.: :. ..: .: . ...:
NP_112 NKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMA--AEIKKR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARMMRGL
:
NP_112 MGPGAASGGERPNLKIDSTPVKPAGGGCC
180 190 200
>>NP_004654 (OMIM: 605570) ras-related protein Rab-11A i (216 aa)
initn: 429 init1: 319 opt: 432 Z-score: 491.0 bits: 98.3 E(85289): 1.3e-20
Smith-Waterman score: 432; 38.9% identity (70.9% similar) in 175 aa overlap (5-174:2-176)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
:. :. ::.:.: .:.:: ::::..: . . . . :... : .: .::
NP_004 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
. .: ..:::.:: :. .: .: ::: :..::::::.. ..:...::.:....:: . .
NP_004 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESF----TELARIVL
.::::. : : :: ..:.:.::. :..:.:.: : . :. .: ::. :::
NP_004 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARM
NP_004 QKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI
180 190 200 210
>>NP_004209 (OMIM: 604198) ras-related protein Rab-11B [ (218 aa)
initn: 403 init1: 319 opt: 431 Z-score: 489.8 bits: 98.1 E(85289): 1.5e-20
Smith-Waterman score: 431; 38.9% identity (71.4% similar) in 175 aa overlap (5-174:2-176)
10 20 30 40 50 60
pF1KB8 MSAPGSPDQAYDFLLKFLLVGDRDVGKSEILESLQDGAAESPYSHLGGIDYKTTTILLDG
:. :. ::.:.: .:.:: ::::..: . . . . :... : .: .::
NP_004 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG
10 20 30 40 50
70 80 90 100 110
pF1KB8 QRVKLKLWDTSGQGRFCTIFRSYSRGAQGVILVYDIANRWSFEGMDRWIKKIEEHAPG-V
. .: ..:::.:: :. .: .: ::: :..::::::.. ..:...::.:....:: . .
NP_004 KTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PKILVGNRLHLAFKRQVPREQAQAYAERLGVTFFEVSPLCNFNIIESF----TELARIVL
.::::. : : :: ..:.:.::. ...:.:.: : . :. :.: ::. :::
NP_004 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LRHRMNWLGRPSKVLSLQDLCCRTIVSCTPVHLVDKLPLPSTLRSHLKSFSMAKGLNARM
NP_004 QKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
180 190 200 210
277 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:34:33 2016 done: Fri Nov 4 15:34:34 2016
Total Scan time: 7.410 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]