Result of FASTA (ccds) for
pF1KB8785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8785, 293 aa
1>>>pF1KB8785 293 - 293 aa - 293 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4154+/-0.00091; mu= 10.1547+/- 0.056
mean_var=217.2465+/-43.319, 0's: 0 Z-trim(113.6): 23 B-trim: 0 in 0/55
Lambda= 0.087016
statistics sampled from 14221 (14235) to 14221 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.437), width: 16
Scan time: 2.780
The best scores are: opt bits E(32554)
CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1 ( 293) 1897 250.0 1.5e-66
CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1 ( 293) 1828 241.3 6.3e-64
CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1 ( 293) 1762 233.0 2e-61
CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1 ( 293) 1762 233.0 2e-61
CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14 ( 293) 1716 227.3 1.1e-59
CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14 ( 306) 1105 150.6 1.4e-36
CCDS75760.1 RALYL gene_id:138046|Hs108|chr8 ( 280) 841 117.4 1.2e-26
CCDS13230.1 RALY gene_id:22913|Hs108|chr20 ( 306) 694 99.0 4.6e-21
CCDS55253.1 RALYL gene_id:138046|Hs108|chr8 ( 291) 613 88.8 5.1e-18
CCDS55252.1 RALYL gene_id:138046|Hs108|chr8 ( 304) 613 88.8 5.3e-18
CCDS13229.1 RALY gene_id:22913|Hs108|chr20 ( 290) 479 72.0 5.9e-13
>>CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1 (293 aa)
initn: 1897 init1: 1897 opt: 1897 Z-score: 1308.0 bits: 250.0 E(32554): 1.5e-66
Smith-Waterman score: 1897; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
250 260 270 280 290
>>CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1 (293 aa)
initn: 1828 init1: 1828 opt: 1828 Z-score: 1261.2 bits: 241.3 E(32554): 6.3e-64
Smith-Waterman score: 1828; 96.2% identity (99.3% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
:::::::::::::::::::. :::::::::::::::::::::::::::::::::::::::
CCDS76 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS76 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::::::::::::::: ::::::.::.:::..::.::::::.::::::::::
CCDS76 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS
250 260 270 280 290
>>CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1 (293 aa)
initn: 1762 init1: 1762 opt: 1762 Z-score: 1216.4 bits: 233.0 E(32554): 2e-61
Smith-Waterman score: 1762; 93.5% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
:::::::::::::::::::::::::::::::::::::::::::::::::::::..:::::
CCDS76 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS76 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
:::::::::::::::::::::::::::. :: ::::::::::::.::: :::.:::::::
CCDS76 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::.:::: : :: ::::::.:::::::::: ::::::::: .::::::
CCDS76 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS
250 260 270 280 290
>>CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1 (293 aa)
initn: 1762 init1: 1762 opt: 1762 Z-score: 1216.4 bits: 233.0 E(32554): 2e-61
Smith-Waterman score: 1762; 93.5% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
:::::::::::::::::::::::::::::::::::::::::::::::::::::..:::::
CCDS72 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS72 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
:::::::::::::::::::::::::::. :: ::::::::::::.::: :::.:::::::
CCDS72 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::.:::: : :: ::::::.:::::::::: ::::::::: .::::::
CCDS72 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS
250 260 270 280 290
>>CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14 (293 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1185.2 bits: 227.3 E(32554): 1.1e-59
Smith-Waterman score: 1716; 90.8% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
CCDS45 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
.:::::::::::::::.::.:::::::::::::.::::::::::::::::::: ::::::
CCDS45 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
: :::.::::::::::: :::::::::.:::::::::::::::::.::::::::::::::
CCDS45 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::.:::::::::::::::::::::::::: ::.:: ::::::::::.:::::.:::::
CCDS45 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::::::: :::: :::.::::::::::::::::::::::::.::.:::
CCDS45 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
250 260 270 280 290
>>CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14 (306 aa)
initn: 1104 init1: 1104 opt: 1105 Z-score: 770.5 bits: 150.6 E(32554): 1.4e-36
Smith-Waterman score: 1680; 86.9% identity (92.8% similar) in 306 aa overlap (1-293:1-306)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
CCDS41 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
.:::::::::::::::.::.:::::::::::::.:::::::::::::
CCDS41 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR
:::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
CCDS41 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
:::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
CCDS41 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST
:.:::::.:::::::::.::::::: :::: :::.::::::::::::::::::::::::.
CCDS41 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
290
pF1KB8 NGQDDS
::.:::
CCDS41 NGEDDS
>>CCDS75760.1 RALYL gene_id:138046|Hs108|chr8 (280 aa)
initn: 661 init1: 661 opt: 841 Z-score: 591.8 bits: 117.4 E(32554): 1.2e-26
Smith-Waterman score: 841; 52.0% identity (76.0% similar) in 279 aa overlap (3-271:8-280)
10 20 30 40 50
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
:::::: ::.:.::::::::::: .::: :.::::::::::.:::::::.:::
CCDS75 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 QYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYG
:: .:..::::::::..:.::.: .:::.:.::: : . : :: . .: : :: ::
CCDS75 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYSGYVFDYDY-
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS---SK
.. :.:. .... .:::::: ::.: :: :.. .:.::::. :. :.:.:.. :
CCDS75 YRDDFYNRLFDYHGRVPPPPR---AVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTASGST
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 SGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEE-----EQSS
..:::.:.::.::.:::::: :.:::: ::::::.: : :.:... . :: ..
CCDS75 GSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLIQEEC
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 SSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRD
: :.. .. .::: . :. : : ...: .:: : . . ::
CCDS75 VSEIADHS-TEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
240 250 260 270 280
290
pF1KB8 STNGQDDS
>>CCDS13230.1 RALY gene_id:22913|Hs108|chr20 (306 aa)
initn: 602 init1: 481 opt: 694 Z-score: 491.6 bits: 99.0 E(32554): 4.6e-21
Smith-Waterman score: 702; 44.1% identity (70.4% similar) in 304 aa overlap (2-289:7-303)
10 20 30 40 50
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
::::::: ::.:.::::::::::: .:::::::.::::::..::::::::.:::
CCDS13 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 QYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYG
::..:..::::: ::.::..:.:..:::.:.::: .: . :.::.:. .: : :: ::
CCDS13 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-
70 80 90 100 110
120 130 140 150 160
pF1KB8 FQRDYYDGMYSFPARVPPPP-PIALAVVPSKRQRLSGNTSRRGKSG-----FNSKSGKRG
.. :.:: .... .:. : : : : :: :: :.. :: :.. : ...
CCDS13 YRDDFYDRLFDYRGRLSPVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTT
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 SSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSS
:: . :::...::::: ::::::...:.:: ::.: ::. . :.. . ....
CCDS13 SSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGG
180 190 200 210 220 230
230 240 250 260 270
pF1KB8 MKKDETHVKMESEGGAED---------SAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEE
. . . ::. . ..: : : . ..:.::.. :. .:.: :.
CCDS13 GGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEH
240 250 260 270 280 290
280 290
pF1KB8 GEDDRDSTNGQDDS
..: :. .:
CCDS13 SQDT-DADDGALQ
300
>>CCDS55253.1 RALYL gene_id:138046|Hs108|chr8 (291 aa)
initn: 668 init1: 462 opt: 613 Z-score: 436.9 bits: 88.8 E(32554): 5.1e-18
Smith-Waterman score: 819; 50.0% identity (73.1% similar) in 290 aa overlap (3-271:8-291)
10 20 30 40 50
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
:::::: ::.:.::::::::::: .::: :.::::::::::.:::::::.:::
CCDS55 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
60 70 80 90 100
pF1KB8 QYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY----------
:: .:..::::::::..:.::.: .:::.:.::: : . : :: . .:
CCDS55 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 --GSSFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSK
: :: :: .. :.:. .... .:::::: ::.: :: :.. .:.::::. :. :
CCDS55 VGGYVFDYDY-YRDDFYNRLFDYHGRVPPPPR---AVIPLKRPRVAVTTTRRGKGVFSMK
130 140 150 160 170
170 180 190 200 210 220
pF1KB8 SGKRGS---SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKS
.:.:.. : ..:::.:.::.::.:::::: :.:::: ::::::.: : :.:... .
CCDS55 GGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQL
180 190 200 210 220 230
230 240 250 260 270
pF1KB8 EE-----EQSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIKDDE
:: .. : :.. .. .::: . :. : : ...: .:: : . . ::
CCDS55 EESLVLIQEECVSEIADHS-TEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
240 250 260 270 280 290
280 290
pF1KB8 KEAEEGEDDRDSTNGQDDS
>>CCDS55252.1 RALYL gene_id:138046|Hs108|chr8 (304 aa)
initn: 668 init1: 462 opt: 613 Z-score: 436.7 bits: 88.8 E(32554): 5.3e-18
Smith-Waterman score: 819; 50.0% identity (73.1% similar) in 290 aa overlap (3-271:21-304)
10 20 30 40
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGK
:::::: ::.:.::::::::::: .::: :.:::::::::
CCDS55 MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 IAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAA
:.:::::::.::::: .:..::::::::..:.::.: .:::.:.::: : . : :: .
CCDS55 IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS
70 80 90 100 110 120
110 120 130 140 150
pF1KB8 EMY------------GSSFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSG
.: : :: :: .. :.:. .... .:::::: ::.: :: :..
CCDS55 ALYRLESKEPFLSVGGYVFDYDY-YRDDFYNRLFDYHGRVPPPPR---AVIPLKRPRVAV
130 140 150 160 170
160 170 180 190 200
pF1KB8 NTSRRGKSGFNSKSGKRGS---SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKE
.:.::::. :. :.:.:.. : ..:::.:.::.::.:::::: :.:::: ::::::.
CCDS55 TTTRRGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQ
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB8 QSKQEVEVKNAKSEE-----EQSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNED
: : :.:... . :: .. : :.. .. .::: . :. : : ...: .::
CCDS55 Q-KAEAEAQKKQLEESLVLIQEECVSEIADHS-TEEPAEGGPDADGEEMTDGIEEDFDED
240 250 260 270 280 290
270 280 290
pF1KB8 QGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
: . . ::
CCDS55 GGHELFLQIK
300
293 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:36:01 2016 done: Fri Nov 4 15:36:02 2016
Total Scan time: 2.780 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]