Result of FASTA (omim) for
pF1KB8785
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8785, 293 aa
1>>>pF1KB8785 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6262+/-0.000372; mu= 9.2037+/- 0.024
mean_var=236.8533+/-47.948, 0's: 0 Z-trim(121.8): 62 B-trim: 352 in 1/57
Lambda= 0.083336
statistics sampled from 38874 (38936) to 38874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.457), width: 16
Scan time: 8.690
The best scores are: opt bits E(85289)
NP_001070911 (OMIM: 164020) heterogeneous nuclear ( 293) 1716 218.4 1.4e-56
XP_016876742 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1716 218.4 1.4e-56
XP_011535014 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1716 218.4 1.4e-56
XP_016876741 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1716 218.4 1.4e-56
NP_004491 (OMIM: 164020) heterogeneous nuclear rib ( 293) 1716 218.4 1.4e-56
XP_006720188 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1716 218.4 1.4e-56
XP_011535011 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1105 144.9 1.8e-34
NP_001070910 (OMIM: 164020) heterogeneous nuclear ( 306) 1105 144.9 1.8e-34
NP_112604 (OMIM: 164020) heterogeneous nuclear rib ( 306) 1105 144.9 1.8e-34
XP_011535010 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1105 144.9 1.8e-34
XP_011535013 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1105 144.9 1.8e-34
XP_011535012 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1105 144.9 1.8e-34
XP_016868558 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 841 113.1 6.2e-25
XP_016868557 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 841 113.1 6.2e-25
NP_001274172 (OMIM: 614648) RNA-binding Raly-like ( 280) 841 113.1 6.2e-25
XP_016868555 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 841 113.1 6.2e-25
XP_016868560 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 841 113.1 6.2e-25
XP_016868559 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 841 113.1 6.2e-25
XP_016868556 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 841 113.1 6.2e-25
XP_016868547 (OMIM: 614648) PREDICTED: RNA-binding ( 293) 841 113.2 6.3e-25
XP_011515764 (OMIM: 614648) PREDICTED: RNA-binding ( 227) 787 106.5 4.9e-23
XP_016868569 (OMIM: 614648) PREDICTED: RNA-binding ( 227) 787 106.5 4.9e-23
XP_016868570 (OMIM: 614648) PREDICTED: RNA-binding ( 224) 786 106.4 5.2e-23
XP_016868571 (OMIM: 614648) PREDICTED: RNA-binding ( 224) 786 106.4 5.2e-23
XP_016868564 (OMIM: 614648) PREDICTED: RNA-binding ( 237) 786 106.4 5.4e-23
XP_005260391 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 694 95.5 1.4e-19
XP_016883220 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 694 95.5 1.4e-19
XP_011526997 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 694 95.5 1.4e-19
XP_011526996 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 694 95.5 1.4e-19
NP_057951 (OMIM: 614663) RNA-binding protein Raly ( 306) 694 95.5 1.4e-19
XP_016868548 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 613 85.7 1.1e-16
XP_016868554 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 613 85.7 1.1e-16
XP_016868550 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 613 85.7 1.1e-16
XP_016868553 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 613 85.7 1.1e-16
XP_016868551 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 613 85.7 1.1e-16
NP_001093862 (OMIM: 614648) RNA-binding Raly-like ( 291) 613 85.7 1.1e-16
NP_776247 (OMIM: 614648) RNA-binding Raly-like pro ( 291) 613 85.7 1.1e-16
XP_016868549 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 613 85.7 1.1e-16
NP_001093863 (OMIM: 614648) RNA-binding Raly-like ( 291) 613 85.7 1.1e-16
XP_016868552 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 613 85.7 1.1e-16
NP_001093861 (OMIM: 614648) RNA-binding Raly-like ( 304) 613 85.8 1.2e-16
XP_016868563 (OMIM: 614648) PREDICTED: RNA-binding ( 238) 582 81.9 1.3e-15
XP_016868561 (OMIM: 614648) PREDICTED: RNA-binding ( 251) 582 81.9 1.4e-15
XP_016868567 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 580 81.7 1.5e-15
XP_016868568 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 580 81.7 1.5e-15
XP_016868566 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 580 81.7 1.5e-15
XP_016868565 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 580 81.7 1.5e-15
XP_016868562 (OMIM: 614648) PREDICTED: RNA-binding ( 248) 580 81.7 1.6e-15
NP_031393 (OMIM: 614663) RNA-binding protein Raly ( 290) 479 69.6 8e-12
XP_005260393 (OMIM: 614663) PREDICTED: RNA-binding ( 290) 479 69.6 8e-12
>>NP_001070911 (OMIM: 164020) heterogeneous nuclear ribo (293 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1137.0 bits: 218.4 E(85289): 1.4e-56
Smith-Waterman score: 1716; 90.8% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
NP_001 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
.:::::::::::::::.::.:::::::::::::.::::::::::::::::::: ::::::
NP_001 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
: :::.::::::::::: :::::::::.:::::::::::::::::.::::::::::::::
NP_001 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::.:::::::::::::::::::::::::: ::.:: ::::::::::.:::::.:::::
NP_001 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::::::: :::: :::.::::::::::::::::::::::::.::.:::
NP_001 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
250 260 270 280 290
>>XP_016876742 (OMIM: 164020) PREDICTED: heterogeneous n (293 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1137.0 bits: 218.4 E(85289): 1.4e-56
Smith-Waterman score: 1716; 90.8% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
XP_016 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
.:::::::::::::::.::.:::::::::::::.::::::::::::::::::: ::::::
XP_016 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
: :::.::::::::::: :::::::::.:::::::::::::::::.::::::::::::::
XP_016 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::.:::::::::::::::::::::::::: ::.:: ::::::::::.:::::.:::::
XP_016 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::::::: :::: :::.::::::::::::::::::::::::.::.:::
XP_016 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
250 260 270 280 290
>>XP_011535014 (OMIM: 164020) PREDICTED: heterogeneous n (293 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1137.0 bits: 218.4 E(85289): 1.4e-56
Smith-Waterman score: 1716; 90.8% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
.:::::::::::::::.::.:::::::::::::.::::::::::::::::::: ::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
: :::.::::::::::: :::::::::.:::::::::::::::::.::::::::::::::
XP_011 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::.:::::::::::::::::::::::::: ::.:: ::::::::::.:::::.:::::
XP_011 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::::::: :::: :::.::::::::::::::::::::::::.::.:::
XP_011 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
250 260 270 280 290
>>XP_016876741 (OMIM: 164020) PREDICTED: heterogeneous n (293 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1137.0 bits: 218.4 E(85289): 1.4e-56
Smith-Waterman score: 1716; 90.8% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
XP_016 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
.:::::::::::::::.::.:::::::::::::.::::::::::::::::::: ::::::
XP_016 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
: :::.::::::::::: :::::::::.:::::::::::::::::.::::::::::::::
XP_016 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::.:::::::::::::::::::::::::: ::.:: ::::::::::.:::::.:::::
XP_016 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::::::: :::: :::.::::::::::::::::::::::::.::.:::
XP_016 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
250 260 270 280 290
>>NP_004491 (OMIM: 164020) heterogeneous nuclear ribonuc (293 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1137.0 bits: 218.4 E(85289): 1.4e-56
Smith-Waterman score: 1716; 90.8% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
NP_004 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
.:::::::::::::::.::.:::::::::::::.::::::::::::::::::: ::::::
NP_004 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
: :::.::::::::::: :::::::::.:::::::::::::::::.::::::::::::::
NP_004 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::.:::::::::::::::::::::::::: ::.:: ::::::::::.:::::.:::::
NP_004 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::::::: :::: :::.::::::::::::::::::::::::.::.:::
NP_004 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
250 260 270 280 290
>>XP_006720188 (OMIM: 164020) PREDICTED: heterogeneous n (293 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1137.0 bits: 218.4 E(85289): 1.4e-56
Smith-Waterman score: 1716; 90.8% identity (96.9% similar) in 293 aa overlap (1-293:1-293)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
XP_006 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
.:::::::::::::::.::.:::::::::::::.::::::::::::::::::: ::::::
XP_006 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
: :::.::::::::::: :::::::::.:::::::::::::::::.::::::::::::::
XP_006 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
::::.:::::::::::::::::::::::::: ::.:: ::::::::::.:::::.:::::
XP_006 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS
::::.::::::: :::: :::.::::::::::::::::::::::::.::.:::
XP_006 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS
250 260 270 280 290
>>XP_011535011 (OMIM: 164020) PREDICTED: heterogeneous n (306 aa)
initn: 1104 init1: 1104 opt: 1105 Z-score: 739.8 bits: 144.9 E(85289): 1.8e-34
Smith-Waterman score: 1680; 86.9% identity (92.8% similar) in 306 aa overlap (1-293:1-306)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
.:::::::::::::::.::.:::::::::::::.:::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR
:::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
:::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST
:.:::::.:::::::::.::::::: :::: :::.::::::::::::::::::::::::.
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
290
pF1KB8 NGQDDS
::.:::
XP_011 NGEDDS
>>NP_001070910 (OMIM: 164020) heterogeneous nuclear ribo (306 aa)
initn: 1104 init1: 1104 opt: 1105 Z-score: 739.8 bits: 144.9 E(85289): 1.8e-34
Smith-Waterman score: 1680; 86.9% identity (92.8% similar) in 306 aa overlap (1-293:1-306)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
NP_001 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
.:::::::::::::::.::.:::::::::::::.:::::::::::::
NP_001 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR
:::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
NP_001 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
:::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
NP_001 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST
:.:::::.:::::::::.::::::: :::: :::.::::::::::::::::::::::::.
NP_001 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
290
pF1KB8 NGQDDS
::.:::
NP_001 NGEDDS
>>NP_112604 (OMIM: 164020) heterogeneous nuclear ribonuc (306 aa)
initn: 1104 init1: 1104 opt: 1105 Z-score: 739.8 bits: 144.9 E(85289): 1.8e-34
Smith-Waterman score: 1680; 86.9% identity (92.8% similar) in 306 aa overlap (1-293:1-306)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
NP_112 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
.:::::::::::::::.::.:::::::::::::.:::::::::::::
NP_112 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR
:::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
NP_112 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
:::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
NP_112 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST
:.:::::.:::::::::.::::::: :::: :::.::::::::::::::::::::::::.
NP_112 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
290
pF1KB8 NGQDDS
::.:::
NP_112 NGEDDS
>>XP_011535010 (OMIM: 164020) PREDICTED: heterogeneous n (306 aa)
initn: 1104 init1: 1104 opt: 1105 Z-score: 739.8 bits: 144.9 E(85289): 1.8e-34
Smith-Waterman score: 1680; 86.9% identity (92.8% similar) in 306 aa overlap (1-293:1-306)
10 20 30 40 50 60
pF1KB8 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
:::::::: ::.:::::::::::::::::::::::::::::::.::::::::::::: .:
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100
pF1KB8 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS-------------
.:::::::::::::::.::.:::::::::::::.:::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKR
:::::: ::::::: :::.::::::::::: :::::::::.:::::::::::::::::.:
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS
:::::::::::::::::.:::::::::::::::::::::::::: ::.:: :::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 SMKKDETHVKMESEGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDST
:.:::::.:::::::::.::::::: :::: :::.::::::::::::::::::::::::.
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
290
pF1KB8 NGQDDS
::.:::
XP_011 NGEDDS
293 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:36:02 2016 done: Fri Nov 4 15:36:03 2016
Total Scan time: 8.690 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]