Result of FASTA (ccds) for
pF1KB8791
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8791, 319 aa
1>>>pF1KB8791 319 - 319 aa - 319 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7428+/-0.00113; mu= 13.5017+/- 0.066
mean_var=139.2615+/-44.929, 0's: 0 Z-trim(103.8): 218 B-trim: 1066 in 2/44
Lambda= 0.108682
statistics sampled from 7291 (7606) to 7291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.234), width: 16
Scan time: 2.380
The best scores are: opt bits E(32554)
CCDS2480.1 GPR55 gene_id:9290|Hs108|chr2 ( 319) 2175 353.3 1.5e-97
CCDS9410.1 LPAR6 gene_id:10161|Hs108|chr13 ( 344) 527 94.9 9.5e-20
CCDS14441.1 LPAR4 gene_id:2846|Hs108|chrX ( 370) 527 95.0 9.9e-20
CCDS2541.1 GPR35 gene_id:2859|Hs108|chr2 ( 309) 510 92.2 5.6e-19
CCDS56174.1 GPR35 gene_id:2859|Hs108|chr2 ( 340) 510 92.3 6e-19
CCDS2656.1 CCR4 gene_id:1233|Hs108|chr3 ( 360) 390 73.5 2.9e-13
CCDS2684.1 CCR8 gene_id:1237|Hs108|chr3 ( 355) 381 72.1 7.5e-13
CCDS14442.1 P2RY10 gene_id:27334|Hs108|chrX ( 339) 375 71.1 1.4e-12
CCDS2737.1 CCR1 gene_id:1230|Hs108|chr3 ( 355) 373 70.8 1.8e-12
CCDS43069.1 CX3CR1 gene_id:1524|Hs108|chr3 ( 355) 367 69.9 3.4e-12
CCDS2733.1 CCR9 gene_id:10803|Hs108|chr3 ( 357) 367 69.9 3.5e-12
CCDS2732.1 CCR9 gene_id:10803|Hs108|chr3 ( 369) 367 69.9 3.5e-12
CCDS54571.1 CX3CR1 gene_id:1524|Hs108|chr3 ( 387) 367 69.9 3.6e-12
CCDS14443.1 GPR174 gene_id:84636|Hs108|chrX ( 333) 366 69.7 3.7e-12
CCDS2706.1 ACKR2 gene_id:1238|Hs108|chr3 ( 384) 366 69.7 4e-12
CCDS4032.1 F2R gene_id:2149|Hs108|chr5 ( 425) 362 69.2 6.6e-12
CCDS2148.1 GPR17 gene_id:2840|Hs108|chr2 ( 367) 352 67.5 1.8e-11
CCDS3169.1 P2RY1 gene_id:5028|Hs108|chr3 ( 373) 346 66.6 3.5e-11
CCDS9943.1 BDKRB1 gene_id:623|Hs108|chr14 ( 353) 344 66.2 4.2e-11
CCDS14258.1 GPR34 gene_id:2857|Hs108|chrX ( 381) 344 66.3 4.4e-11
CCDS55069.1 OPRM1 gene_id:4988|Hs108|chr6 ( 389) 344 66.3 4.4e-11
CCDS47508.1 OPRM1 gene_id:4988|Hs108|chr6 ( 392) 344 66.3 4.5e-11
CCDS47505.1 OPRM1 gene_id:4988|Hs108|chr6 ( 397) 344 66.3 4.5e-11
CCDS55070.1 OPRM1 gene_id:4988|Hs108|chr6 ( 400) 344 66.3 4.5e-11
CCDS47506.1 OPRM1 gene_id:4988|Hs108|chr6 ( 403) 344 66.3 4.5e-11
CCDS47504.1 OPRM1 gene_id:4988|Hs108|chr6 ( 406) 344 66.3 4.6e-11
CCDS43517.1 OPRM1 gene_id:4988|Hs108|chr6 ( 418) 344 66.3 4.6e-11
CCDS47507.1 OPRM1 gene_id:4988|Hs108|chr6 ( 420) 344 66.3 4.7e-11
CCDS43518.1 OPRM1 gene_id:4988|Hs108|chr6 ( 446) 344 66.4 4.8e-11
CCDS47503.1 OPRM1 gene_id:4988|Hs108|chr6 ( 493) 344 66.4 5.1e-11
CCDS9491.1 GPR18 gene_id:2841|Hs108|chr13 ( 331) 341 65.7 5.6e-11
CCDS14398.1 P2RY4 gene_id:5030|Hs108|chrX ( 365) 341 65.8 5.9e-11
>>CCDS2480.1 GPR55 gene_id:9290|Hs108|chr2 (319 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 1864.9 bits: 353.3 E(32554): 1.5e-97
Smith-Waterman score: 2175; 99.7% identity (99.7% similar) in 319 aa overlap (1-319:1-319)
10 20 30 40 50 60
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IYMINLAVFDLLLVLSLPFKMVLSQVQSPFPSLCTLVECLYFVSMYGSVFTICFISMDRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 IYMINLAVFDLLLVLSLPFKMVLSQVQSPFPSLCTLVECLYFVSMYGSVFTICFISMDRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGKVEKYMCFHNMSDDTWSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 LAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGKVEKYMCFHNMSDDTWSAK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VFFPLEVFGFLLPMVIMGFCCSRSIHILLGRRDHTQDWVQQKACIYSIAASLAVFVVSFL
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VFFPLEVFGFLLPMGIMGFCCSRSIHILLGRRDHTQDWVQQKACIYSIAASLAVFVVSFL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYFVIKEFRMNIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYFVIKEFRMNIR
250 260 270 280 290 300
310
pF1KB8 AHRPSRVQLVLQDTTISRG
:::::::::::::::::::
CCDS24 AHRPSRVQLVLQDTTISRG
310
>>CCDS9410.1 LPAR6 gene_id:10161|Hs108|chr13 (344 aa)
initn: 466 init1: 180 opt: 527 Z-score: 468.0 bits: 94.9 E(32554): 9.5e-20
Smith-Waterman score: 527; 30.6% identity (61.2% similar) in 304 aa overlap (7-300:6-303)
10 20 30 40 50 60
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATS
:. :... . . :: . .:::::. : .::. : :: : :.
CCDS94 MVSVNSSHCFYN--DSFKYTLYGCMFSMVFVLGLISNCVAIYIFICVLKVR----NETT
10 20 30 40 50
70 80 90 100 110
pF1KB8 IYMINLAVFDLLLVLSLPFKMVLSQVQS-PFPSL-CTLVECLYFVSMYGSVFTICFISMD
::::::. :::.:..:::.. ... :: .: : . :....::::.. . ::.:
CCDS94 TYMINLAMSDLLFVFTLPFRIFYFTTRNWPFGDLLCKISVMLFYTNMYGSILFLTCISVD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 RFLAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIP---IYSFH--GKVEKYMCFHNMS
::::: ::. . ::. :. .: .:. : :: : . : : :. . ::.:.
CCDS94 RFLAIVYPFKSKTLRTKRNAKIVCTGVWLTVIGGSAPAVFVQSTHSQGNNASEACFENFP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 DDTWS---AKVFFPLEVFGFLLPMVIMGFCCSRSIHILLGRRDHTQDWVQQKACIYSIAA
. ::. ... . .:. ::..:... : : .. : ... ... . : .
CCDS94 EATWKTYLSRIVIFIEIVGFFIPLILNVTCSSMVLKTLTKPVTLSRSKINKTKVLKMIFV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 SLAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYF
: .: :.: .....: :::.. .:.: . .. . ...:.. :::.: . :::
CCDS94 HLIIFCFCFVPYNINLILYSLVRTQTFVNCSVVAAVRTMYPITLCIAVSNCCFDPIVYYF
240 250 260 270 280 290
300 310
pF1KB8 VIKEFRMNIRAHRPSRVQLVLQDTTISRG
. .. .:.
CCDS94 TSDTIQNSIKMKNWSVRRSDFRFSEVHGAENFIQHNLQTLKSKIFDNESAA
300 310 320 330 340
>>CCDS14441.1 LPAR4 gene_id:2846|Hs108|chrX (370 aa)
initn: 440 init1: 233 opt: 527 Z-score: 467.7 bits: 95.0 E(32554): 9.9e-20
Smith-Waterman score: 527; 29.7% identity (63.5% similar) in 323 aa overlap (1-315:22-338)
10 20 30
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNL
... .... :. : . . .:. ::. .:.:::. :
CCDS14 MGDRRFIDFQFQDSNSSLRPRLGNATANNTCIVD--DSFKYNLNGAVYSVVFILGLITNS
10 20 30 40 50
40 50 60 70 80 90
pF1KB8 LAIHGFSTFLKNRWPDYAATSIYMINLAVFDLLLVLSLPFKMVLS-QVQSPF-PSLCTLV
... : .: : . :.:.. :::: :::.: .::::. . . . :: .:: .
CCDS14 VSLFVFCFRMKMR----SETAIFITNLAVSDLLFVCTLPFKIFYNFNRHWPFGDTLCKIS
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB8 ECLYFVSMYGSVFTICFISMDRFLAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIY
.....:::.. . ::.:::::: ::. .:. :. .: .:.:: .:.:
CCDS14 GTAFLTNIYGSMLFLTCISVDRFLAIVYPFRSRTIRTRRNSAIVCAGVWILVLSGGISAS
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 SFHG-KVEKYM--CFHNMSDDTWS---AKVFFPLEVFGFLLPMVIMGFCCSRSIHILLGR
: .:.. ::...: .:. .:. . .:: ::..:... : : .. :
CCDS14 LFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEVVGFIIPLILNVSCSSVVLRTLRKP
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 RDHTQDWVQQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQ
.: ...: . :.. .::::: :.: . .:: :::.. :..: .. ...
CCDS14 ATLSQIGTNKKKVLKMITVHMAVFVVCFVPYNSVLFLYALVRSQAITNCFLERFAKIMYP
240 250 260 270 280 290
280 290 300 310
pF1KB8 LSMCFSNVNCCLDVFCYYFVIKEFRMNIRAHRPSRVQLVLQDTTISRG
...:....:::.: : :::... :. .. . :.. ... :
CCDS14 ITLCLATLNCCFDPFIYYFTLESFQKSFYINAHIRMESLFKTETPLTTKPSLPAIQEEVS
300 310 320 330 340 350
CCDS14 DQTTNNGGELMLESTF
360 370
>>CCDS2541.1 GPR35 gene_id:2859|Hs108|chr2 (309 aa)
initn: 471 init1: 173 opt: 510 Z-score: 454.2 bits: 92.2 E(32554): 5.6e-19
Smith-Waterman score: 510; 36.9% identity (61.2% similar) in 268 aa overlap (31-296:31-284)
10 20 30 40 50 60
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATS
.::::::: ::. : .. .: . :
CCDS25 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQ-QWTE---TR
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 IYMINLAVFDLLLVLSLPFKMVLSQVQSPFPSLCTLVECLYFVSMYGSVFTICFISMDRF
::: :::: :: :. .::: . . : : :: : . .:... : :. . :..::.
CCDS25 IYMTNLAVADLCLLCTLPFVLHSLRDTSDTP-LCQLSQGIYLTNRYMSISLVTAIAVDRY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 LAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGKVEKYMCFHNMSDDTWSAK
.:.:.:: . :::::. ..: ..:::: ::. . : : .::.. . :
CCDS25 VAVRHPLRARGLRSPRQAAAVCAVLWVLV-IGSLVARWLLGIQEGGFCFRSTRHNFNSMA
120 130 140 150 160 170
190 200 210 220 230
pF1KB8 VFFPLEVFGFLLPMVIMGFCCSRSIHILLGR--RDHTQDWVQQKACIYSIAASLAVFVVS
::: .:: ::.... :: . . : : : : . .:: . :.: ::::
CCDS25 --FPL--LGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAA-RMVWANLLVFVVC
180 190 200 210 220
240 250 260 270 280 290
pF1KB8 FLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYFVIKEFRMN
:::.:.:. ... : . : ..: : .. .:..:::::..:::.. :::.
CCDS25 FLPLHVGLTVRLAVGWN---ACALLETIRRALYITSKLSDANCCLDAICYYYMAKEFQEA
230 240 250 260 270 280
300 310
pF1KB8 IRAHRPSRVQLVLQDTTISRG
CCDS25 SALAVAPSAKAHKSQDSLCVTLA
290 300
>>CCDS56174.1 GPR35 gene_id:2859|Hs108|chr2 (340 aa)
initn: 471 init1: 173 opt: 510 Z-score: 453.7 bits: 92.3 E(32554): 6e-19
Smith-Waterman score: 510; 36.9% identity (61.2% similar) in 268 aa overlap (31-296:62-315)
10 20 30 40 50 60
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATS
.::::::: ::. : .. .: . :
CCDS56 MNGTYNTCGSSDLTWPPAIKLGFYAYLGVLLVLGLLLNSLALWVFCCRMQ-QWTE---TR
40 50 60 70 80
70 80 90 100 110 120
pF1KB8 IYMINLAVFDLLLVLSLPFKMVLSQVQSPFPSLCTLVECLYFVSMYGSVFTICFISMDRF
::: :::: :: :. .::: . . : : :: : . .:... : :. . :..::.
CCDS56 IYMTNLAVADLCLLCTLPFVLHSLRDTSDTP-LCQLSQGIYLTNRYMSISLVTAIAVDRY
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB8 LAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGKVEKYMCFHNMSDDTWSAK
.:.:.:: . :::::. ..: ..:::: ::. . : : .::.. . :
CCDS56 VAVRHPLRARGLRSPRQAAAVCAVLWVLV-IGSLVARWLLGIQEGGFCFRSTRHNFNSMA
150 160 170 180 190 200
190 200 210 220 230
pF1KB8 VFFPLEVFGFLLPMVIMGFCCSRSIHILLGR--RDHTQDWVQQKACIYSIAASLAVFVVS
::: .:: ::.... :: . . : : : : . .:: . :.: ::::
CCDS56 --FPL--LGFYLPLAVVVFCSLKVVTALAQRPPTDVGQAEATRKAA-RMVWANLLVFVVC
210 220 230 240 250 260
240 250 260 270 280 290
pF1KB8 FLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYFVIKEFRMN
:::.:.:. ... : . : ..: : .. .:..:::::..:::.. :::.
CCDS56 FLPLHVGLTVRLAVGWN---ACALLETIRRALYITSKLSDANCCLDAICYYYMAKEFQEA
270 280 290 300 310
300 310
pF1KB8 IRAHRPSRVQLVLQDTTISRG
CCDS56 SALAVAPSAKAHKSQDSLCVTLA
320 330 340
>>CCDS2656.1 CCR4 gene_id:1233|Hs108|chr3 (360 aa)
initn: 397 init1: 103 opt: 390 Z-score: 351.7 bits: 73.5 E(32554): 2.9e-13
Smith-Waterman score: 390; 25.8% identity (62.4% similar) in 298 aa overlap (10-299:29-315)
10 20 30 40
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLA
: .:.. . . . .. .::.::: : ..
CCDS26 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 IHGFSTFLKNRWPDYAATSIYMINLAVFDLLLVLSLPFKMVLSQVQSPFP-SLCTLVECL
. . . . : . :..:..:::. :::.:.:::: . : : .:: .. .
CCDS26 VLVLFKYKRLR----SMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWM
70 80 90 100 110
110 120 130 140 150
pF1KB8 YFVSMYGSVFTICFISMDRFLAIRYPLLVSHLRSPRKIFGICCTI--WVLVWTGSIPIYS
:.:..:...: . ..:.::.::: . .. ::. .:. .. : .. .:.: .
CCDS26 YLVGFYSGIFFVMLMSIDRYLAIVHAVF--SLRARTLTYGVITSLATWSVAVFASLPGFL
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 F---HGKVEKYMCF--HNMSDDTWSAKVFFPLEVFGFLLPMVIMGFCCSRSIHILLGRRD
: . . .. .: ..... ::.. . ....:...:. :: :: : :. : .
CCDS26 FSTCYTERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTL----Q
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 HTQDWVQQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLS
: .. ..:: . : : ...:. . : .. .::. ::. . .: .. ... .: .
CCDS26 HCKNEKKNKA-VKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQAT
240 250 260 270 280
280 290 300 310
pF1KB8 MCFSNVNCCLDVFCYYFVIKEFRMNIRAHRPSRVQLVLQDTTISRG
.. :.:::. . :.:. ..:: :
CCDS26 ETLAFVHCCLNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQ
290 300 310 320 330 340
>>CCDS2684.1 CCR8 gene_id:1237|Hs108|chr3 (355 aa)
initn: 130 init1: 66 opt: 381 Z-score: 344.2 bits: 72.1 E(32554): 7.5e-13
Smith-Waterman score: 381; 26.1% identity (61.2% similar) in 299 aa overlap (7-299:22-311)
10 20 30 40
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGF
:. : . .. : : . . ::..:: : :.: .
CCDS26 MDYTLDLSVTTVTDYYYPDIFSSPCDAELIQTNGKLLLAVFYCLLFVFSLLGNSLVILVL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 STFLKNRWPDYAATSIYMINLAVFDLLLVLSLPFKMVLSQVQSPFPS-LCTLVECLYFVS
. : : . :..:..:::. :::.:.:.::. : : . .: .: .:...
CCDS26 VVCKKLR----SITDVYLLNLALSDLLFVFSFPFQTYYLLDQWVFGTVMCKVVSGFYYIG
70 80 90 100 110
110 120 130 140 150 160
pF1KB8 MYGSVFTICFISMDRFLAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGKVE
.:.:.: : ..:.::.::. . . . ..:. : .: ..:. . ..::. :. .
CCDS26 FYSSMFFITLMSVDRYLAVVHAVYALKVRTIRMGTTLCLAVWLTAIMATIPLLVFYQVAS
120 130 140 150 160 170
170 180 190 200 210
pF1KB8 K---YMCFHNMSDDTWSAKVF--FPLEVFGFLLPMVIMGFCCSRSIHILLGRRDHTQDWV
. .:. ....: . :.: : ....:.:.:..:. :: . .: : ..:.. .
CCDS26 EDGVLQCYSFYNQQTLKWKIFTNFKMNILGLLIPFTIFMFCYIKILHQLKRCQNHNKTKA
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 QQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNV
. . : ::. : : ..: .. .:: : .. : .:.... ... .: .
CCDS26 IRLVLIVVIASLL--F---WVPFNVVLFLTSLHSMHILDGCSISQQLTYATHVTEIISFT
240 250 260 270 280 290
280 290 300 310
pF1KB8 NCCLDVFCYYFVIKEFRMNIRAHRPSRVQLVLQDTTISRG
.::.. : :: ..:. ..
CCDS26 HCCVNPVIYAFVGEKFKKHLSEIFQKSCSQIFNYLGRQMPRESCEKSSSCQQHSSRSSSV
300 310 320 330 340 350
>>CCDS14442.1 P2RY10 gene_id:27334|Hs108|chrX (339 aa)
initn: 245 init1: 90 opt: 375 Z-score: 339.3 bits: 71.1 E(32554): 1.4e-12
Smith-Waterman score: 375; 25.3% identity (57.6% similar) in 328 aa overlap (1-314:13-333)
10 20 30 40
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVL----GLLLNLLAIHG
:....:: .. .:... .:.... :..: ::: : :.
CCDS14 MANLDKYTETFKMGSNSTSTAEIYCNVTNV--KFQYSLYATTYILIFIPGLLANSAALWV
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 FSTFLKNRWPDYAATSIYMINLAVFDLLLVLSLPFKMVLSQVQS-PFP-SLCTLVECLYF
. :.... . :.::::.: :: :::::... . :: .:: : : .
CCDS14 LCRFISKK----NKAIIFMINLSVADLAHVLSLPLRIYYYISHHWPFQRALCLLCFYLKY
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 VSMYGSVFTICFISMDRFLAIRYPLLVSHLRSPRKIFGICCTIWVLVWTGSIPIYSFHGK
..::.:. . ::..: . . :. . . : :: .::..: :. .:. ...
CCDS14 LNMYASICFLTCISLQRCFFLLKPFRARDWKR-RYDVGISAAIWIVVGTACLPFPILRST
120 130 140 150 160 170
170 180 190 200 210
pF1KB8 --VEKYMCFHNMSDDTWSAKVFFPL----EVFGFLLPMVIMGFCCSRSIHILLGRRDHTQ
.. :: ... .: .. . :. ::..:..:...: .. : :
CCDS14 DLNNNKSCFADLGYKQMNAVALVGMITVAELAGFVIPVIIIAWCTWKTTISLRQPPMAFQ
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 DWVQQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCF
... . . ::: . : : :..:.. .:....: : . . .: . .:.
CCDS14 GISERQKALRMVFMCAAVFFICFTPYHINFIFYTMVKETIISSCPVVRIALYFHPFCLCL
240 250 260 270 280 290
280 290 300 310
pF1KB8 SNVNCCLDVFCYYFVIKEFRMNIRAHRPS--RVQLVLQDTTISRG
... : :: . :::. .::: .. : : : .:. ...
CCDS14 ASLCCLLDPILYYFMASEFRDQLSRHGSSVTRSRLMSKESGSSMIG
300 310 320 330
>>CCDS2737.1 CCR1 gene_id:1230|Hs108|chr3 (355 aa)
initn: 308 init1: 96 opt: 373 Z-score: 337.4 bits: 70.8 E(32554): 1.8e-12
Smith-Waterman score: 373; 27.8% identity (61.4% similar) in 295 aa overlap (31-310:45-325)
10 20 30 40 50
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTF--LKNRWPDYAA
::.::. :.:.. . . :::
CCDS27 EFDYGDATPCQKVNERAFGAQLLPPLYSLVFVIGLVGNILVVLVLVQYKRLKN------M
20 30 40 50 60
60 70 80 90 100 110
pF1KB8 TSIYMINLAVFDLLLVLSLPFKMVLSQVQSPF---PSLCTLVECLYFVSMYGSVFTICFI
::::..:::. :::....::: . .... . ..: .. .:....:. .: : ..
CCDS27 TSIYLLNLAISDLLFLFTLPF-WIDYKLKDDWVFGDAMCKILSGFYYTGLYSEIFFIILL
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 SMDRFLAIRYPLLVSHLRSPRKIFGICCTI--WVLVWTGSIPIYSF---HGKVEKYMC--
..::.::: . ... ::. ::. .: :.:. .:.: : . . .. :
CCDS27 TIDRYLAIVHAVFA--LRARTVTFGVITSIIIWALAILASMPGLYFSKTQWEFTHHTCSL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 -FHNMSDDTWSAKVFFPLEVFGFLLPMVIMGFCCSRSIHILLGRRDHTQDWVQQKACIYS
: . : :. . :..::..::...: .: . :.::: :: . . ..:: .
CCDS27 HFPHESLREWKLFQALKLNLFGLVLPLLVMIICYTGIIKILL-RRPNEK---KSKA-VRL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 IAASLAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFC
: . . .: . . : .: .... . : ::. .. ... .:.. .. ..::..
CCDS27 IFVIMIIFFLFWTPYNLTILISVFQDFLFTHECEQSRHLDLAVQVTEVIAYTHCCVNPVI
250 260 270 280 290 300
290 300 310
pF1KB8 YYFVIKEFRMNIRA--HRPSRVQLVLQDTTISRG
: :: ..:: .: :: :.::
CCDS27 YAFVGERFRKYLRQLFHRRVAVHLVKWLPFLSVDRLERVSSTSPSTGEHELSAGF
310 320 330 340 350
>>CCDS43069.1 CX3CR1 gene_id:1524|Hs108|chr3 (355 aa)
initn: 323 init1: 108 opt: 367 Z-score: 332.3 bits: 69.9 E(32554): 3.4e-12
Smith-Waterman score: 367; 28.0% identity (61.1% similar) in 275 aa overlap (31-296:42-301)
10 20 30 40 50 60
pF1KB8 MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATS
:..::. :::.. .... : . ..:.
CCDS43 FEYDDLAEACYIGDIVVFGTVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPK----SVTD
20 30 40 50 60
70 80 90 100 110
pF1KB8 IYMINLAVFDLLLVLSLPF-KMVLSQVQSPFPSLCTLVECLYFVSMYGSVFTICFISMDR
::..:::. :::.: .::: : . .. ..: .. ..:....::.: : ::.::
CCDS43 IYLLNLALSDLLFVATLPFWTHYLINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 FLAIRYPLLVSHLRSPRKI-FGICCTIWVLVWTGSI----PIYSFHGKVEKYMCFHNMSD
.::: .:... . : . :. :: . ::...: : . : : .. :. .. .
CCDS43 YLAI---VLAANSMNNRTVQHGV--TISLGVWAAAILVAAPQFMFT-KQKENECLGDYPE
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 ---DTWSAKVFFPLEVFGFLLPMVIMGFCCSRSIHILLGRRDHTQDWVQQKACIYSIAAS
. : . . .:::::..::..: : :. :.. ..: .. : :
CCDS43 VLQEIWPVLRNVETNFLGFLLPLLIMSYCYFRIIQTLFSCKNH-----KKAKAIKLILLV
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 LAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVNCCLDVFCYYFV
. :: . . : .. .::. : .:. : .... . :... . .:::. . : :.
CCDS43 VIVFFLFWTPYNVMIFLETLKLYDFFPSCDMRKDLRLALSVTETVAFSHCCLNPLIYAFA
240 250 260 270 280 290
300 310
pF1KB8 IKEFRMNIRAHRPSRVQLVLQDTTISRG
..::
CCDS43 GEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQRSRHGSVLSSNFTYHTSDGDALLLL
300 310 320 330 340 350
319 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:37:51 2016 done: Fri Nov 4 15:37:51 2016
Total Scan time: 2.380 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]