Result of FASTA (omim) for
pF1KB8796
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8796, 333 aa
1>>>pF1KB8796 333 - 333 aa - 333 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4913+/-0.000418; mu= 21.0290+/- 0.026
mean_var=102.4290+/-24.435, 0's: 0 Z-trim(112.0): 591 B-trim: 1106 in 1/48
Lambda= 0.126725
statistics sampled from 20145 (20818) to 20145 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.244), width: 16
Scan time: 6.650
The best scores are: opt bits E(85289)
XP_016861685 (OMIM: 600552) PREDICTED: chemokine X ( 333) 2242 420.9 1.9e-117
XP_016861686 (OMIM: 600552) PREDICTED: chemokine X ( 333) 2242 420.9 1.9e-117
XP_016861687 (OMIM: 600552) PREDICTED: chemokine X ( 333) 2242 420.9 1.9e-117
XP_016861688 (OMIM: 600552) PREDICTED: chemokine X ( 333) 2242 420.9 1.9e-117
XP_016861689 (OMIM: 600552) PREDICTED: chemokine X ( 333) 2242 420.9 1.9e-117
XP_016861690 (OMIM: 600552) PREDICTED: chemokine X ( 333) 2242 420.9 1.9e-117
NP_005274 (OMIM: 600552) chemokine XC receptor 1 [ ( 333) 2242 420.9 1.9e-117
NP_001019815 (OMIM: 600552) chemokine XC receptor ( 333) 2242 420.9 1.9e-117
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 699 138.9 1.7e-32
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 696 138.3 2.4e-32
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 696 138.3 2.4e-32
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 689 137.0 5.7e-32
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 689 137.0 5.7e-32
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 689 137.0 5.7e-32
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 689 137.1 6e-32
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 608 122.2 1.6e-27
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 608 122.2 1.6e-27
NP_006555 (OMIM: 605163) C-X-C chemokine receptor ( 342) 542 110.1 6.9e-24
XP_005264866 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 542 110.1 6.9e-24
XP_011531592 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 542 110.1 6.9e-24
XP_011531593 (OMIM: 605163) PREDICTED: C-X-C chemo ( 342) 542 110.1 6.9e-24
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 487 100.1 7.4e-21
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 487 100.1 7.4e-21
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 443 92.0 2e-18
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 415 86.9 7e-17
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 415 87.0 7.1e-17
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 415 87.0 7.5e-17
XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemo ( 415) 415 87.0 7.5e-17
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 410 86.0 1.3e-16
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 410 86.0 1.3e-16
NP_001154888 (OMIM: 603071) uracil nucleotide/cyst ( 339) 400 84.2 4.5e-16
NP_001154889 (OMIM: 603071) uracil nucleotide/cyst ( 339) 400 84.2 4.5e-16
NP_001154887 (OMIM: 603071) uracil nucleotide/cyst ( 367) 400 84.2 4.7e-16
XP_016859322 (OMIM: 603071) PREDICTED: uracil nucl ( 367) 400 84.2 4.7e-16
NP_005282 (OMIM: 603071) uracil nucleotide/cystein ( 367) 400 84.2 4.7e-16
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 386 81.7 2.8e-15
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 372 79.1 1.6e-14
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 372 79.1 1.6e-14
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 366 78.0 3.4e-14
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 366 78.0 3.4e-14
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 366 78.0 3.4e-14
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 366 78.0 3.4e-14
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 366 78.0 3.4e-14
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 366 78.0 3.4e-14
XP_016862925 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 358 76.5 9.2e-14
NP_003956 (OMIM: 608379) C-C chemokine receptor-li ( 344) 358 76.5 9.2e-14
XP_011532511 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 358 76.5 9.2e-14
XP_011532510 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 358 76.5 9.2e-14
NP_001124382 (OMIM: 608379) C-C chemokine receptor ( 356) 358 76.5 9.4e-14
NP_001044 (OMIM: 182455) somatostatin receptor typ ( 364) 350 75.1 2.6e-13
>>XP_016861685 (OMIM: 600552) PREDICTED: chemokine XC re (333 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2229.7 bits: 420.9 E(85289): 1.9e-117
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
250 260 270 280 290 300
310 320 330
pF1KB8 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
:::::::::::::::::::::::::::::::::
XP_016 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
310 320 330
>>XP_016861686 (OMIM: 600552) PREDICTED: chemokine XC re (333 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2229.7 bits: 420.9 E(85289): 1.9e-117
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
250 260 270 280 290 300
310 320 330
pF1KB8 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
:::::::::::::::::::::::::::::::::
XP_016 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
310 320 330
>>XP_016861687 (OMIM: 600552) PREDICTED: chemokine XC re (333 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2229.7 bits: 420.9 E(85289): 1.9e-117
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
250 260 270 280 290 300
310 320 330
pF1KB8 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
:::::::::::::::::::::::::::::::::
XP_016 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
310 320 330
>>XP_016861688 (OMIM: 600552) PREDICTED: chemokine XC re (333 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2229.7 bits: 420.9 E(85289): 1.9e-117
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
250 260 270 280 290 300
310 320 330
pF1KB8 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
:::::::::::::::::::::::::::::::::
XP_016 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
310 320 330
>>XP_016861689 (OMIM: 600552) PREDICTED: chemokine XC re (333 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2229.7 bits: 420.9 E(85289): 1.9e-117
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
250 260 270 280 290 300
310 320 330
pF1KB8 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
:::::::::::::::::::::::::::::::::
XP_016 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
310 320 330
>>XP_016861690 (OMIM: 600552) PREDICTED: chemokine XC re (333 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2229.7 bits: 420.9 E(85289): 1.9e-117
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
250 260 270 280 290 300
310 320 330
pF1KB8 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
:::::::::::::::::::::::::::::::::
XP_016 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
310 320 330
>>NP_005274 (OMIM: 600552) chemokine XC receptor 1 [Homo (333 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2229.7 bits: 420.9 E(85289): 1.9e-117
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
250 260 270 280 290 300
310 320 330
pF1KB8 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
:::::::::::::::::::::::::::::::::
NP_005 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
310 320 330
>>NP_001019815 (OMIM: 600552) chemokine XC receptor 1 [H (333 aa)
initn: 2242 init1: 2242 opt: 2242 Z-score: 2229.7 bits: 420.9 E(85289): 1.9e-117
Smith-Waterman score: 2242; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KB8 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESSGNPESTTFFYYDLQSQPCENQAWVFATLATTVLYCLVFLLSLVGNSLVLWVLVKYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLNMIFSISLYSSIFFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTIFHKVLSSGCDYSEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TWYLTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRSKRRHRTVKLIFAIVVAYFLSWGP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSHCCFNPVLYVFVGVKFRTHLKH
250 260 270 280 290 300
310 320 330
pF1KB8 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
:::::::::::::::::::::::::::::::::
NP_001 VLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
310 320 330
>>NP_001116513 (OMIM: 601267) C-C chemokine receptor typ (374 aa)
initn: 655 init1: 356 opt: 699 Z-score: 704.6 bits: 138.9 E(85289): 1.7e-32
Smith-Waterman score: 699; 36.5% identity (68.4% similar) in 329 aa overlap (4-323:16-336)
10 20 30 40
pF1KB8 MESSGNPESTTFFYYDLQSQPCE--NQAWVFATLATTVLYCLVFLLSL
::. : :::: :: . ::. . . : : :: :::....
NP_001 MLSTSRSRFIRNTNESGE-EVTTFFDYDY-GAPCHKFDVKQIGAQLLPP-LYSLVFIFGF
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 VGNSLVLWVLVKYESLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLN
::: ::. .:.. ..:. ::.:..::: .:::.: ::.: ::.:. .:::..
NP_001 VGNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 MIFSISLYSSIFFLTIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTI
.. :. ...:::. ..:: :::..: . .:.. :. :.... .:......:. :
NP_001 GLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGII
120 130 140 150 160 170
170 180 190 200 210
pF1KB8 FHKVLSSG----CD-YSELTWY-LTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRS-KR
: : . : : : . ..... : ..: : :...:: ::.::.: :. :.
NP_001 FTKCQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKK
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 RHRTVKLIFAIVVAYFLSWGPYNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSH
:::.:..::.:...::: : :::....:.:. . . .::. .::. : . ..:...:
NP_001 RHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTH
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 CCFNPVLYVFVGVKFRTHLKHVLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
::.::..:.::: :::. : :. ::. :: . .::
NP_001 CCINPIIYAFVGEKFRS-LFHIALG---CRI-APLQKPVCGGPGVRPGKNVKVTTQGLLD
300 310 320 330 340 350
NP_001 GRGKGKSIGRAPEASLQDKEGA
360 370
>>XP_011532371 (OMIM: 601267) PREDICTED: C-C chemokine r (360 aa)
initn: 659 init1: 356 opt: 696 Z-score: 701.8 bits: 138.3 E(85289): 2.4e-32
Smith-Waterman score: 705; 36.7% identity (69.1% similar) in 324 aa overlap (4-313:16-333)
10 20 30 40
pF1KB8 MESSGNPESTTFFYYDLQSQPCE--NQAWVFATLATTVLYCLVFLLSL
::. : :::: :: . ::. . . : : :: :::....
XP_011 MLSTSRSRFIRNTNESGE-EVTTFFDYDYGA-PCHKFDVKQIGAQLLPP-LYSLVFIFGF
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 VGNSLVLWVLVKYESLESLTNIFILNLCLSDLVFACLLPVWISPYHWGWVLGDFLCKLLN
::: ::. .:.. ..:. ::.:..::: .:::.: ::.: ::.:. .:::..
XP_011 VGNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 MIFSISLYSSIFFLTIMTIHRYLSVVSPLSTLRVPTLRCRVLVTMAVWVASILSSILDTI
.. :. ...:::. ..:: :::..: . .:.. :. :.... .:......:. :
XP_011 GLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGII
120 130 140 150 160 170
170 180 190 200 210
pF1KB8 FHKVLSSG----CD-YSELTWY-LTSVYQHNLFFLLSLGIILFCYVEILRTLFRSRS-KR
: : . : : : . ..... : ..: : :...:: ::.::.: :. :.
XP_011 FTKCQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKK
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 RHRTVKLIFAIVVAYFLSWGPYNFTLFLQTLFRTQIIRSCEAKQQLEYALLICRNLAFSH
:::.:..::.:...::: : :::....:.:. . . .::. .::. : . ..:...:
XP_011 RHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTH
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB8 CCFNPVLYVFVGVKFRTHL-----KHVLRQFWFCRLQAPSPASIPHSPGAFAYEGASFY
::.::..:.::: ::: .: ::. ..: :. : :
XP_011 CCINPIIYAFVGEKFRRYLSVFFRKHITKRF--CK-QCPVFYRETVDGVTSTNTPSTGEQ
300 310 320 330 340 350
XP_011 EVSAGL
360
333 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:40:17 2016 done: Fri Nov 4 15:40:18 2016
Total Scan time: 6.650 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]