Result of FASTA (ccds) for
pF1KB8805
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8805, 351 aa
1>>>pF1KB8805 351 - 351 aa - 351 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3687+/-0.000707; mu= 16.5399+/- 0.043
mean_var=72.6505+/-14.481, 0's: 0 Z-trim(110.8): 7 B-trim: 0 in 0/52
Lambda= 0.150472
statistics sampled from 11875 (11879) to 11875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.365), width: 16
Scan time: 2.870
The best scores are: opt bits E(32554)
CCDS32093.1 TMEM30B gene_id:161291|Hs108|chr14 ( 351) 2479 546.9 9.1e-156
CCDS4983.1 TMEM30A gene_id:55754|Hs108|chr6 ( 361) 1243 278.6 5.5e-75
CCDS47453.1 TMEM30A gene_id:55754|Hs108|chr6 ( 325) 930 210.6 1.4e-54
>>CCDS32093.1 TMEM30B gene_id:161291|Hs108|chr14 (351 aa)
initn: 2479 init1: 2479 opt: 2479 Z-score: 2910.0 bits: 546.9 E(32554): 9.1e-156
Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)
10 20 30 40 50 60
pF1KB8 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE
310 320 330 340 350
>>CCDS4983.1 TMEM30A gene_id:55754|Hs108|chr6 (361 aa)
initn: 1197 init1: 342 opt: 1243 Z-score: 1459.7 bits: 278.6 E(32554): 5.5e-75
Smith-Waterman score: 1243; 53.4% identity (76.1% similar) in 343 aa overlap (6-347:22-355)
10 20 30 40
pF1KB8 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGL
::. ...:::::: :::::::::.:.:. .::.:: ::
CCDS49 MAMNYNAKDEVDGGPPCAPGGTAK-TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGL
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 AFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELF
:: .:.:.. .::.:.:.: :::: .. :. : . :: :. :.: . :
CCDS49 IFIPIGIGIFVTSNNIREIEIDYTGTEPSSPCNKCLSPDV-----TPCFCTINFTLEKSF
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 QGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGA
.: :..:: :.:::::.::: ::::.::.: ::: .: .:: ::.:. :::::::
CCDS49 EGNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDK-PIAPCGA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 IANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTA
::::.:::.. :. . . : . . : ..::::::: .::::::: . .: :.::.
CCDS49 IANSMFNDTLELFLIGNDSYP-IPIALKKKGIAWWTDKNVKFRNPPG-GDNLEERFKGTT
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB8 PPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARI-RQGNYSAGLPRGAY
: :: .::: :. ::.:.::::.::.::::::::::::::: : :... :: : :
CCDS49 KPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRY
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 RVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQ
.:.::::::. : :.: .:.:.:::::::::::::::..:::. .: : :.::. .:.
CCDS49 SLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYR
300 310 320 330 340 350
350
pF1KB8 DQDDDDEE
....
CCDS49 NSSNTADITI
360
>>CCDS47453.1 TMEM30A gene_id:55754|Hs108|chr6 (325 aa)
initn: 1080 init1: 342 opt: 930 Z-score: 1093.1 bits: 210.6 E(32554): 1.4e-54
Smith-Waterman score: 1080; 49.9% identity (70.3% similar) in 343 aa overlap (6-347:22-319)
10 20 30 40
pF1KB8 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGL
::. ...:::::: :::::::::.:.:. .::.:: ::
CCDS47 MAMNYNAKDEVDGGPPCAPGGTAK-TRRPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGL
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 AFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELF
:: .:.:.. .::.:.:.:
CCDS47 IFIPIGIGIFVTSNNIREIE----------------------------------------
60 70
110 120 130 140 150 160
pF1KB8 QGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGA
: :..:: :.:::::.::: ::::.::.: ::: .: .:: ::.:. :::::::
CCDS47 -GNVFMYYGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNEDK-PIAPCGA
80 90 100 110 120 130
170 180 190 200 210 220
pF1KB8 IANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTA
::::.:::.. :. . . : . . : ..::::::: .::::::: . .: :.::.
CCDS47 IANSMFNDTLELFLIGNDSYP-IPIALKKKGIAWWTDKNVKFRNPPG-GDNLEERFKGTT
140 150 160 170 180 190
230 240 250 260 270 280
pF1KB8 PPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARI-RQGNYSAGLPRGAY
: :: .::: :. ::.:.::::.::.::::::::::::::: : :... :: : :
CCDS47 KPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIERKSDLHPTLPAGRY
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB8 RVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQ
.:.::::::. : :.: .:.:.:::::::::::::::..:::. .: : :.::. .:.
CCDS47 SLNVTYNYPVHYFDGRKRMILSTISWMGGKNPFLGIAYIAVGSISFLLGVVLLVINHKYR
260 270 280 290 300 310
350
pF1KB8 DQDDDDEE
....
CCDS47 NSSNTADITI
320
351 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:44:20 2016 done: Fri Nov 4 15:44:20 2016
Total Scan time: 2.870 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]