Result of FASTA (omim) for
pF1KB8809
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8809, 360 aa
1>>>pF1KB8809 360 - 360 aa - 360 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3363+/-0.000509; mu= 22.1559+/- 0.032
mean_var=123.2576+/-32.314, 0's: 0 Z-trim(109.0): 625 B-trim: 912 in 1/48
Lambda= 0.115523
statistics sampled from 16352 (17126) to 16352 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.536), E-opt: 0.2 (0.201), width: 16
Scan time: 7.350
The best scores are: opt bits E(85289)
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 2398 411.8 1.2e-114
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 2398 411.8 1.2e-114
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 1206 213.2 7.3e-55
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 1206 213.2 7.3e-55
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 1145 203.0 8.4e-52
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 1134 201.2 3e-51
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 1134 201.2 3e-51
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 1099 195.4 1.8e-49
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 1096 194.8 2.4e-49
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 1069 190.3 5.5e-48
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 1069 190.3 5.5e-48
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 1069 190.3 5.5e-48
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 1069 190.3 5.5e-48
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 1069 190.4 5.6e-48
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 1069 190.4 5.6e-48
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 1069 190.4 5.9e-48
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 1069 190.4 5.9e-48
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 946 169.8 8.1e-42
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 946 169.8 8.1e-42
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 946 169.8 8.1e-42
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 946 169.9 8.5e-42
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 888 160.2 6.9e-39
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 880 158.9 1.7e-38
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 880 158.9 1.7e-38
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 836 151.5 2.8e-36
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 836 151.5 2.8e-36
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 836 151.5 2.8e-36
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 836 151.6 2.8e-36
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 811 147.4 4.9e-35
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 811 147.4 4.9e-35
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 811 147.4 4.9e-35
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 811 147.4 4.9e-35
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 811 147.4 4.9e-35
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 811 147.4 4.9e-35
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 807 146.7 7.6e-35
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 807 146.7 7.7e-35
NP_000625 (OMIM: 146929,609423) C-X-C chemokine re ( 350) 775 141.3 3.1e-33
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 773 141.0 4e-33
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 773 141.0 4e-33
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 771 140.7 4.9e-33
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 771 140.7 4.9e-33
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 762 139.1 1.3e-32
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 734 134.5 3.6e-31
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 734 134.6 3.6e-31
XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemo ( 415) 734 134.6 3.8e-31
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 734 134.6 3.8e-31
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 718 131.8 2.2e-30
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 718 131.8 2.2e-30
NP_003956 (OMIM: 608379) C-C chemokine receptor-li ( 344) 696 128.2 2.8e-29
XP_011532510 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 696 128.2 2.8e-29
>>XP_016861176 (OMIM: 604836) PREDICTED: C-C chemokine r (360 aa)
initn: 2398 init1: 2398 opt: 2398 Z-score: 2179.5 bits: 411.8 E(85289): 1.2e-114
Smith-Waterman score: 2398; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KB8 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCYT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 VKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVHCCLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVHCCLN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDLHDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDLHDAL
310 320 330 340 350 360
>>NP_005499 (OMIM: 604836) C-C chemokine receptor type 4 (360 aa)
initn: 2398 init1: 2398 opt: 2398 Z-score: 2179.5 bits: 411.8 E(85289): 1.2e-114
Smith-Waterman score: 2398; 100.0% identity (100.0% similar) in 360 aa overlap (1-360:1-360)
10 20 30 40 50 60
pF1KB8 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCYT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKNKA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 VKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVHCCLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVHCCLN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDLHDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDLHDAL
310 320 330 340 350 360
>>NP_000570 (OMIM: 601373,609532,610379,612522) C-C chem (352 aa)
initn: 1149 init1: 701 opt: 1206 Z-score: 1105.9 bits: 213.2 E(85289): 7.3e-55
Smith-Waterman score: 1206; 49.4% identity (80.4% similar) in 352 aa overlap (8-356:2-348)
10 20 30 40 50
pF1KB8 MNPTDIADTTLDESIYS-NYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSV
: .. ::. ::: : :: : ..: .. .:::::::::.::..:: .
NP_000 MDYQVSSPIYDINYYTSE----PCQKINVKQIAARLLPPLYSLVFIFGFVGNML
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 VVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLV
:.:.:.. :::.::::.::::::::::.:....:::..::: :: :: .:.... .:..
NP_000 VILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 GFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCY
::.:::::..:..::::::.:::::.:.:::.:.::.::. :: :::::::::..:.
NP_000 GFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPGIIFTRSQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TERNHTYCKTKYSLNSTT-WKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKK-
: : :.... .. :: ...:.: :::::.:: .:..::: :..:: .:.::::
NP_000 KEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRCRNEKKR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 NKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVHC
..::..::....... ::.::::::.:.:. :. :..:. :: :.:.::::...::
NP_000 HRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHC
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 CLNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDLH
:.::::: :.:::::.:.: .:. . .:. :...: . . :: ::.:: ....
NP_000 CINPIIYAFVGEKFRNYLLVFFQK-HIAKRFCKCCSIFQQEAPERASSVYTRSTGEQEIS
300 310 320 330 340
360
pF1KB8 DAL
NP_000 VGL
350
>>NP_001093638 (OMIM: 601373,609532,610379,612522) C-C c (352 aa)
initn: 1149 init1: 701 opt: 1206 Z-score: 1105.9 bits: 213.2 E(85289): 7.3e-55
Smith-Waterman score: 1206; 49.4% identity (80.4% similar) in 352 aa overlap (8-356:2-348)
10 20 30 40 50
pF1KB8 MNPTDIADTTLDESIYS-NYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSV
: .. ::. ::: : :: : ..: .. .:::::::::.::..:: .
NP_001 MDYQVSSPIYDINYYTSE----PCQKINVKQIAARLLPPLYSLVFIFGFVGNML
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 VVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYLV
:.:.:.. :::.::::.::::::::::.:....:::..::: :: :: .:.... .:..
NP_001 VILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 GFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCY
::.:::::..:..::::::.:::::.:.:::.:.::.::. :: :::::::::..:.
NP_001 GFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPGIIFTRSQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TERNHTYCKTKYSLNSTT-WKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKK-
: : :.... .. :: ...:.: :::::.:: .:..::: :..:: .:.::::
NP_001 KEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRCRNEKKR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 NKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVHC
..::..::....... ::.::::::.:.:. :. :..:. :: :.:.::::...::
NP_001 HRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHC
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 CLNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDLH
:.::::: :.:::::.:.: .:. . .:. :...: . . :: ::.:: ....
NP_001 CINPIIYAFVGEKFRNYLLVFFQK-HIAKRFCKCCSIFQQEAPERASSVYTRSTGEQEIS
300 310 320 330 340
360
pF1KB8 DAL
NP_001 VGL
350
>>NP_001286 (OMIM: 601159) C-C chemokine receptor type 1 (355 aa)
initn: 1126 init1: 459 opt: 1145 Z-score: 1051.0 bits: 203.0 E(85289): 8.4e-52
Smith-Waterman score: 1145; 50.2% identity (79.8% similar) in 331 aa overlap (28-356:23-351)
10 20 30 40 50 60
pF1KB8 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNSVV
:: : . .::: .::::::::::.::.:: .:
NP_001 METPNTTEDYDTTTEFDYGDATPCQKVNERAFGAQLLPPLYSLVFVIGLVGNILV
10 20 30 40 50
70 80 90 100 110
pF1KB8 VLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFW-GYYAADQWVFGLGLCKMISWMYLV
:::: .::::..::..::::::::::::.:.:::: : :.:::: ..::..: .: .
NP_001 VLVLVQYKRLKNMTSIYLLNLAISDLLFLFTLPFWIDYKLKDDWVFGDAMCKILSGFYYT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 GFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTCY
:.:: :::..:..::::::::::::.:::::.:.:::::. :..:..::.::. ::
NP_001 GLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIIIWALAILASMPGLYFSKTQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 TERNHTYCKTKYSLNSTT-WKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKN
: .: :. .. .: ::....:..:..:::.:: .:..::. ::. : . ::::.
NP_001 WEFTHHTCSLHFPHESLREWKLFQALKLNLFGLVLPLLVMIICYTGIIKILLRRPNEKKS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVHCC
:::..::.....:. ::::::..... .. .. ..: :.:: :.:.::..:..:::
NP_001 KAVRLIFVIMIIFFLFWTPYNLTILISVFQDFLFTHECEQSRHLDLAVQVTEVIAYTHCC
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 LNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDLHD
.::.:: :.::.::::. :::. : : .. .:.. . ::. . :: .:.:
NP_001 VNPVIYAFVGERFRKYLRQLFHR-RVAVHLVKWLPFLSVDRLERVSST-SPSTGEHELSA
300 310 320 330 340 350
360
pF1KB8 AL
NP_001 GF
>>NP_001116868 (OMIM: 601267) C-C chemokine receptor typ (360 aa)
initn: 1087 init1: 676 opt: 1134 Z-score: 1041.0 bits: 201.2 E(85289): 3e-51
Smith-Waterman score: 1134; 48.7% identity (78.6% similar) in 337 aa overlap (28-360:31-360)
10 20 30 40 50
pF1KB8 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGN
:: : .: .: .:::::::::.::..::
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 SVVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMY
.:::.:.. :.:. .::.::::::::::::...::.:.. ::..:::: ..::... .:
NP_001 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 LVGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFST
.:...::::..:..::::::::::::.:.:::.:.::.::. :: ::::::.::..:.
NP_001 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 CYTERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKK
: : . : . . :. . .. ::::::.:: ::..::: :..:: .:.::::
NP_001 CQKEDSVYVCGPYFPRG---WNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKK
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 -NKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVH
..::..::....... ::::::::..:.:. :. :..: :: : :.::::...:
NP_001 RHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTH
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 CCLNPIIYFFLGEKFRKYILQLFK---TCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMD
::.::::: :.:::::.:. .:. : : .:. : .. ..: .:. : :: .
NP_001 CCINPIIYAFVGEKFRRYLSVFFRKHITKR----FCKQCPVFYRETVDGVTSTNTPSTGE
300 310 320 330 340 350
360
pF1KB8 HDLHDAL
... .:
NP_001 QEVSAGL
360
>>XP_011532371 (OMIM: 601267) PREDICTED: C-C chemokine r (360 aa)
initn: 1087 init1: 676 opt: 1134 Z-score: 1041.0 bits: 201.2 E(85289): 3e-51
Smith-Waterman score: 1134; 48.7% identity (78.6% similar) in 337 aa overlap (28-360:31-360)
10 20 30 40 50
pF1KB8 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGN
:: : .: .: .:::::::::.::..::
XP_011 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 SVVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMY
.:::.:.. :.:. .::.::::::::::::...::.:.. ::..:::: ..::... .:
XP_011 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 LVGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFST
.:...::::..:..::::::::::::.:.:::.:.::.::. :: ::::::.::..:.
XP_011 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 CYTERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKK
: : . : . . :. . .. ::::::.:: ::..::: :..:: .:.::::
XP_011 CQKEDSVYVCGPYFPRG---WNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKK
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 -NKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVH
..::..::....... ::::::::..:.:. :. :..: :: : :.::::...:
XP_011 RHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTH
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 CCLNPIIYFFLGEKFRKYILQLFK---TCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMD
::.::::: :.:::::.:. .:. : : .:. : .. ..: .:. : :: .
XP_011 CCINPIIYAFVGEKFRRYLSVFFRKHITKR----FCKQCPVFYRETVDGVTSTNTPSTGE
300 310 320 330 340 350
360
pF1KB8 HDLHDAL
... .:
XP_011 QEVSAGL
360
>>NP_001116513 (OMIM: 601267) C-C chemokine receptor typ (374 aa)
initn: 959 init1: 676 opt: 1099 Z-score: 1009.3 bits: 195.4 E(85289): 1.8e-49
Smith-Waterman score: 1099; 50.8% identity (80.1% similar) in 307 aa overlap (28-333:31-333)
10 20 30 40 50
pF1KB8 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGN
:: : .: .: .:::::::::.::..::
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 SVVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMY
.:::.:.. :.:. .::.::::::::::::...::.:.. ::..:::: ..::... .:
NP_001 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 LVGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFST
.:...::::..:..::::::::::::.:.:::.:.::.::. :: ::::::.::..:.
NP_001 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 CYTERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKK
: : . : . . :. . .. ::::::.:: ::..::: :..:: .:.::::
NP_001 CQKEDSVYVCGPYFPRG---WNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKK
190 200 210 220 230
240 250 260 270 280 290
pF1KB8 -NKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVH
..::..::....... ::::::::..:.:. :. :..: :: : :.::::...:
NP_001 RHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTH
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 CCLNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDL
::.::::: :.:::::. .... :: . ::
NP_001 CCINPIIYAFVGEKFRS-LFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGRGK
300 310 320 330 340 350
360
pF1KB8 HDAL
NP_001 GKSIGRAPEASLQDKEGA
360 370
>>NP_005192 (OMIM: 601834) C-C chemokine receptor type 8 (355 aa)
initn: 1088 init1: 1061 opt: 1096 Z-score: 1006.8 bits: 194.8 E(85289): 2.4e-49
Smith-Waterman score: 1096; 45.5% identity (75.8% similar) in 347 aa overlap (8-351:2-345)
10 20 30 40 50
pF1KB8 MNPTDIADTTLDESI--YSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNS
: ::: :. ..:: . . .:: : :.. :.:.: .: :.:::.:::::
NP_005 MDYTLDLSVTTVTDYYYPDIFSSPCDAELIQTNGKLLLAVFYCLLFVFSLLGNS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 VVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKMISWMYL
.:.::: :.:::.:::::::::.::::::::.:: :: :::::: .::..: .:
NP_005 LVILVLVVCKKLRSITDVYLLNLALSDLLFVFSFPFQTYYLLDQWVFGTVMCKVVSGFYY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFSTC
.::::..::. :::.:::::.::::..:..::. .:. ::.: .:..:..: ..:
NP_005 IGFYSSMFFITLMSVDRYLAVVHAVYALKVRTIRMGTTLCLAVWLTAIMATIPLLVFYQV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 YTERNHTYCKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEKKN
.: . : . :. .. ::.......:::::.::. :..::: :.. :..:.:..:.
NP_005 ASEDGVLQCYSFYNQQTLKWKIFTNFKMNILGLLIPFTIFMFCYIKILHQLKRCQNHNKT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVHCC
::..... ::. : ::.:.:.:::: .: ...:. :.. . : :: ..:: ..:.:::
NP_005 KAIRLVLIVVIASLLFWVPFNVVLFLTSLHSMHILDGCSISQQLTYATHVTEIISFTHCC
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 LNPIIYFFLGEKFRKYILQLF-KTCRGLFVLCQYCGLLQIYSADTPSSSYTQSTMDHDLH
.::.:: :.::::.:.. ..: :.: .: .: : . . ::: : .
NP_005 VNPVIYAFVGEKFKKHLSEIFQKSCSQIF---NYLGRQMPRESCEKSSSCQQHSSRSSSV
300 310 320 330 340 350
360
pF1KB8 DAL
NP_005 DYIL
>>XP_006713023 (OMIM: 601268) PREDICTED: C-C chemokine r (355 aa)
initn: 728 init1: 384 opt: 1069 Z-score: 982.5 bits: 190.3 E(85289): 5.5e-48
Smith-Waterman score: 1069; 46.2% identity (77.1% similar) in 353 aa overlap (9-356:3-351)
10 20 30 40 50
pF1KB8 MNPTDIADTTLD--ESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVFGLLGNS
:.:: :.. .. : :... : : .:. :.::::::::. :::::
XP_006 MTTSLDTVETFGTTSY-YDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNV
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 VVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYA-ADQWVFGLGLCKMISWMY
:::..:.::.::: ::..::::::::::::. .:::: .:. . .:::: :.::..: .:
XP_006 VVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 LVGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPGFLFST
.:.:: :::..:..::::::::::::.:::::.:.:::::..::..::.:.:: :.:
XP_006 HTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 CYTERNHTYCKTKYSLNST-TWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQHCKNEK
..: :.. : ... .:. . .:...:. ::.:: .: .::. ::.:: .: ..:
XP_006 TEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKK
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KNKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATETLAFVH
: ::...::.....:. ::::::....: . . .:: ..:: .. .::..:. :
XP_006 KYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSH
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 CCLNPIIYFFLGEKFRKYILQLFKTCRGLFV-LCQYCGLLQIYSADTPSSSYTQSTMDHD
::.::.:: :.::.::::. ..:. : :.. : .: .: . . .:: . :: . .
XP_006 CCMNPVIYAFVGERFRKYLRHFFH--RHLLMHLGRYIPFLPSEKLER-TSSVSPSTAEPE
300 310 320 330 340 350
360
pF1KB8 LHDAL
:
XP_006 LSIVF
360 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:46:50 2016 done: Fri Nov 4 15:46:52 2016
Total Scan time: 7.350 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]