FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8812, 364 aa
  1>>>pF1KB8812 364 - 364 aa - 364 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9530+/-0.000883; mu= -8.1137+/- 0.053
 mean_var=312.0399+/-63.747, 0's: 0 Z-trim(117.2): 10  B-trim: 174 in 1/53
 Lambda= 0.072605
 statistics sampled from 17857 (17867) to 17857 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.549), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS13769.1 C22orf29 gene_id:79680|Hs108|chr22     ( 364) 2582 283.3 2.3e-76


>>CCDS13769.1 C22orf29 gene_id:79680|Hs108|chr22          (364 aa)
 initn: 2582 init1: 2582 opt: 2582  Z-score: 1484.4  bits: 283.3 E(32554): 2.3e-76
Smith-Waterman score: 2582; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)

               10        20        30        40        50        60
pF1KB8 MPRGRCRQQGPRIPIWAAANYANAHPWQQMDKASPGVAYTPLVDPWIERPCCGDTVCVRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPRGRCRQQGPRIPIWAAANYANAHPWQQMDKASPGVAYTPLVDPWIERPCCGDTVCVRT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TMEQKSTASGTCGGKPAERGPLAGHMPSSRPHRVDFCWVPGSDPGTFDGSPWLLDRFLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TMEQKSTASGTCGGKPAERGPLAGHMPSSRPHRVDFCWVPGSDPGTFDGSPWLLDRFLAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LGDYMSFHFEHYQDNISRVCEILRRLTGRAQAWAAPYLDGDLPLPDDYELFCQDLKEVVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LGDYMSFHFEHYQDNISRVCEILRRLTGRAQAWAAPYLDGDLPLPDDYELFCQDLKEVVQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DPNSFAEYHAVVTCPLPLASSQLPVAPQLPVVRQYLARFLEGLALDMGTAPRSLPAAMAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DPNSFAEYHAVVTCPLPLASSQLPVAPQLPVVRQYLARFLEGLALDMGTAPRSLPAAMAT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PAVSGSNSVSRSALFEQQLTKESTPGPKEPPVLPSSTCSSKPGPVEPASSQPEEAAPTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PAVSGSNSVSRSALFEQQLTKESTPGPKEPPVLPSSTCSSKPGPVEPASSQPEEAAPTPV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PRLSESANPPAQRPDPAHPGGPKPQKTEEEVLETEGDQEVSLGTPQEVVEAPETPGEPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PRLSESANPPAQRPDPAHPGGPKPQKTEEEVLETEGDQEVSLGTPQEVVEAPETPGEPPL
              310       320       330       340       350       360

           
pF1KB8 SPGF
       ::::
CCDS13 SPGF
           




364 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:29:23 2016 done: Sat Nov  5 02:29:23 2016
 Total Scan time:  3.460 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]