FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8822, 396 aa
  1>>>pF1KB8822 396 - 396 aa - 396 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4213+/-0.000995; mu= 12.0554+/- 0.060
 mean_var=134.7889+/-39.365, 0's: 0 Z-trim(107.1): 236  B-trim: 1159 in 2/47
 Lambda= 0.110471
 statistics sampled from 9039 (9379) to 9039 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.288), width:  16
 Scan time:  3.030

The best scores are:                                      opt bits E(32554)
CCDS8878.1 GPR84 gene_id:53831|Hs108|chr12         ( 396) 2616 428.8 4.3e-120


>>CCDS8878.1 GPR84 gene_id:53831|Hs108|chr12              (396 aa)
 initn: 2616 init1: 2616 opt: 2616  Z-score: 2269.5  bits: 428.8 E(32554): 4.3e-120
Smith-Waterman score: 2616; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396)

               10        20        30        40        50        60
pF1KB8 MWNSSDANFSCYHESVLGYRYVAVSWGVVVAVTGTVGNVLTLLALAIQPKLRTRFNLLIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MWNSSDANFSCYHESVLGYRYVAVSWGVVVAVTGTVGNVLTLLALAIQPKLRTRFNLLIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NLTLADLLYCTLLQPFSVDTYLHLHWRTGATFCRVFGLLLFASNSVSILTLCLIALGRYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 NLTLADLLYCTLLQPFSVDTYLHLHWRTGATFCRVFGLLLFASNSVSILTLCLIALGRYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LIAHPKLFPQVFSAKGIVLALVSTWVVGVASFAPLWPIYILVPVVCTCSFDRIRGRPYTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LIAHPKLFPQVFSAKGIVLALVSTWVVGVASFAPLWPIYILVPVVCTCSFDRIRGRPYTT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ILMGIYFVLGLSSVGIFYCLIHRQVKRAAQALDQYKLRQASIHSNHVARTDEAMPGRFQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 ILMGIYFVLGLSSVGIFYCLIHRQVKRAAQALDQYKLRQASIHSNHVARTDEAMPGRFQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LDSRLASGGPSEGISSEPVSAATTQTLEGDSSEVGDQINSKRAKQMAEKSPPEASAKAQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LDSRLASGGPSEGISSEPVSAATTQTLEGDSSEVGDQINSKRAKQMAEKSPPEASAKAQP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 IKGARRAPDSSSEFGKVTRMCFAVFLCFALSYIPFLLLNILDARVQAPRVVHMLAANLTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 IKGARRAPDSSSEFGKVTRMCFAVFLCFALSYIPFLLLNILDARVQAPRVVHMLAANLTW
              310       320       330       340       350       360

              370       380       390      
pF1KB8 LNGCINPVLYAAMNRQFRQAYGSILKRGPRSFHRLH
       ::::::::::::::::::::::::::::::::::::
CCDS88 LNGCINPVLYAAMNRQFRQAYGSILKRGPRSFHRLH
              370       380       390      




396 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:52:15 2016 done: Fri Nov  4 15:52:16 2016
 Total Scan time:  3.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]