FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8828, 434 aa
  1>>>pF1KB8828 434 - 434 aa - 434 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6053+/-0.000912; mu= -3.2382+/- 0.055
 mean_var=355.6776+/-72.636, 0's: 0 Z-trim(117.4): 6  B-trim: 200 in 1/52
 Lambda= 0.068006
 statistics sampled from 18103 (18107) to 18103 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.556), width:  16
 Scan time:  4.000

The best scores are:                                      opt bits E(32554)
CCDS8903.1 ZC3H10 gene_id:84872|Hs108|chr12        ( 434) 2993 306.8 2.6e-83


>>CCDS8903.1 ZC3H10 gene_id:84872|Hs108|chr12             (434 aa)
 initn: 2993 init1: 2993 opt: 2993  Z-score: 1609.1  bits: 306.8 E(32554): 2.6e-83
Smith-Waterman score: 2993; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:1-434)

               10        20        30        40        50        60
pF1KB8 MPDRDSYANGTGSSGGGPGGGGSEEASGAGVGSGGASSDAICRDFLRNVCKRGKRCRYRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MPDRDSYANGTGSSGGGPGGGGSEEASGAGVGSGGASSDAICRDFLRNVCKRGKRCRYRH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGSKEDEDGYKKTGELPPRLRQKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGSKEDEDGYKKTGELPPRLRQKVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AGLGLSPADLPNGKEEVPICRDFLKGDCQRGAKCKFRHLQRDFEFDARGGGGTGGGSTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 AGLGLSPADLPNGKEEVPICRDFLKGDCQRGAKCKFRHLQRDFEFDARGGGGTGGGSTGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VLPGRRHDLYDIYDLPDRGFEDHEPGPKRRRGGCCPPDGPHFESYEYSLAPPRGVECRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VLPGRRHDLYDIYDLPDRGFEDHEPGPKRRRGGCCPPDGPHFESYEYSLAPPRGVECRLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EEENAMLRKRVEELKKQVSNLLATNEVLLEQNAQFRNQAKVITLSSTAPATEQTLAPTVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EEENAMLRKRVEELKKQVSNLLATNEVLLEQNAQFRNQAKVITLSSTAPATEQTLAPTVG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 TVATFNHGIAQTHTTLSSQALQPRPVSQQELVAPAGAPAAPPTNAAPPAAPPPPPPHLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TVATFNHGIAQTHTTLSSQALQPRPVSQQELVAPAGAPAAPPTNAAPPAAPPPPPPHLTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 EITPLSAALAQTIAQGMAPPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 EITPLSAALAQTIAQGMAPPPVSMAPVAVSVAPVAPVAVSMAQPLAGITMSHTTTPMVTY
              370       380       390       400       410       420

              430    
pF1KB8 PIASQSMRITAMPH
       ::::::::::::::
CCDS89 PIASQSMRITAMPH
              430    




434 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:54:32 2016 done: Fri Nov  4 15:54:33 2016
 Total Scan time:  4.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]