FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8838, 463 aa
  1>>>pF1KB8838 463 - 463 aa - 463 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7543+/-0.000833; mu= 15.2002+/- 0.050
 mean_var=76.3766+/-15.556, 0's: 0 Z-trim(107.7): 37  B-trim: 68 in 1/50
 Lambda= 0.146755
 statistics sampled from 9710 (9735) to 9710 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.299), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS14610.1 DCAF12L1 gene_id:139170|Hs108|chrX     ( 463) 3171 681.0 7.1e-196
CCDS43991.1 DCAF12L2 gene_id:340578|Hs108|chrX     ( 463) 2778 597.8  8e-171
CCDS6549.1 DCAF12 gene_id:25853|Hs108|chr9         ( 453) 1843 399.8 3.1e-111


>>CCDS14610.1 DCAF12L1 gene_id:139170|Hs108|chrX          (463 aa)
 initn: 3171 init1: 3171 opt: 3171  Z-score: 3630.0  bits: 681.0 E(32554): 7.1e-196
Smith-Waterman score: 3171; 99.8% identity (99.8% similar) in 463 aa overlap (1-463:1-463)

               10        20        30        40        50        60
pF1KB8 MAQQQTGSRKRKAPAVEAGAESSPSQGLAAADGEGPLLLKRQRRPATYRSMAHYLKVREV
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS14 MAQQQTGSRKRKAPAVEADAESSPSQGLAAADGEGPLLLKRQRRPATYRSMAHYLKVREV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GGWGPARLQGFDGELRGYAVQRLPELLTERQLELGTVNKVFASQWLNSRQVVCGTKCNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GGWGPARLQGFDGELRGYAVQRLPELLTERQLELGTVNKVFASQWLNSRQVVCGTKCNTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FVVDVESGHIARIPLLRDSEARLAQDQQGCGIHAIELNPSKTLLATGGENPNSLAIYQLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FVVDVESGHIARIPLLRDSEARLAQDQQGCGIHAIELNPSKTLLATGGENPNSLAIYQLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDKFDDTVAWHSEVGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDKFDDTVAWHSEVGLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VYAHIRPRDVEAIPRAIINPSNRKVRALACGGKNQELGAVSLDGYFHLWKAGSALSRLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VYAHIRPRDVEAIPRAIINPSNRKVRALACGGKNQELGAVSLDGYFHLWKAGSALSRLLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 IRLPYFRDNVCLTYCDDMSVYAVGSHSHVSFLDLRQDQQNIRPLCSREGGTGVRSLSFYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IRLPYFRDNVCLTYCDDMSVYAVGSHSHVSFLDLRQDQQNIRPLCSREGGTGVRSLSFYR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 HIITVGTGQGSLLFYDVRAQKFLEERASATLESSSGPARRKLRLACGRGWLNHNDFWVNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HIITVGTGQGSLLFYDVRAQKFLEERASATLESSSGPARRKLRLACGRGWLNHNDFWVNY
              370       380       390       400       410       420

              430       440       450       460   
pF1KB8 FGGMEVFPNALYTHCYNWPEMKLFVAGGPLPAGLHGNYAGLWS
       :::::::::::::::::::::::::::::::::::::::::::
CCDS14 FGGMEVFPNALYTHCYNWPEMKLFVAGGPLPAGLHGNYAGLWS
              430       440       450       460   

>>CCDS43991.1 DCAF12L2 gene_id:340578|Hs108|chrX          (463 aa)
 initn: 2778 init1: 2778 opt: 2778  Z-score: 3180.3  bits: 597.8 E(32554): 8e-171
Smith-Waterman score: 2778; 87.0% identity (94.6% similar) in 463 aa overlap (1-463:1-463)

               10        20        30        40        50        60
pF1KB8 MAQQQTGSRKRKAPAVEAGAESSPSQGLAAADGEGPLLLKRQRRPATYRSMAHYLKVREV
       :::::::::::::::::::: :: :::::::::::::: :.:.:::: : ..:::: :::
CCDS43 MAQQQTGSRKRKAPAVEAGAGSSSSQGLAAADGEGPLLPKKQKRPATRRRLVHYLKGREV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GGWGPARLQGFDGELRGYAVQRLPELLTERQLELGTVNKVFASQWLNSRQVVCGTKCNTL
       :. ::: ::::.::::::::::::::::::::.:::.::::::::::.::::::::::::
CCDS43 GARGPAGLQGFEGELRGYAVQRLPELLTERQLDLGTLNKVFASQWLNARQVVCGTKCNTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FVVDVESGHIARIPLLRDSEARLAQDQQGCGIHAIELNPSKTLLATGGENPNSLAIYQLP
       :::::.::::.::::.::.:: ::: .:::::::::::::::::::::::::::::::::
CCDS43 FVVDVQSGHITRIPLMRDKEAGLAQAHQGCGIHAIELNPSKTLLATGGENPNSLAIYQLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDKFDDTVAWHSEVGLP
       .:::::::::::::::::::::::::::::::::::::::::::: :. ..:::::::::
CCDS43 TLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDMFNGSIAWHSEVGLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VYAHIRPRDVEAIPRAIINPSNRKVRALACGGKNQELGAVSLDGYFHLWKAGSALSRLLS
       ::::::::::::::::  ::::::::::: .:::::::::::::::::::: :.::::::
CCDS43 VYAHIRPRDVEAIPRASTNPSNRKVRALAFSGKNQELGAVSLDGYFHLWKARSTLSRLLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 IRLPYFRDNVCLTYCDDMSVYAVGSHSHVSFLDLRQDQQNIRPLCSREGGTGVRSLSFYR
       ::::: :.::::::::..:.:::::.::::::: :: ::::::::::::::::::::::.
CCDS43 IRLPYCRENVCLTYCDELSLYAVGSQSHVSFLDPRQRQQNIRPLCSREGGTGVRSLSFYQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 HIITVGTGQGSLLFYDVRAQKFLEERASATLESSSGPARRKLRLACGRGWLNHNDFWVNY
       ::::::::.:::::::.:::::::::::..:.:  ::: :::.:::::::::..: ::::
CCDS43 HIITVGTGHGSLLFYDIRAQKFLEERASSSLDSMPGPAGRKLKLACGRGWLNQDDVWVNY
              370       380       390       400       410       420

              430       440       450       460   
pF1KB8 FGGMEVFPNALYTHCYNWPEMKLFVAGGPLPAGLHGNYAGLWS
       ::::  :::::::::::::::::::::::::.:::::::::::
CCDS43 FGGMGEFPNALYTHCYNWPEMKLFVAGGPLPSGLHGNYAGLWS
              430       440       450       460   

>>CCDS6549.1 DCAF12 gene_id:25853|Hs108|chr9              (453 aa)
 initn: 1871 init1: 1197 opt: 1843  Z-score: 2110.6  bits: 399.8 E(32554): 3.1e-111
Smith-Waterman score: 1860; 61.3% identity (80.4% similar) in 465 aa overlap (8-463:7-453)

               10        20        30              40        50    
pF1KB8 MAQQQTGSRKRKAPAVEAGAESSPSQGLAAADGEGPL------LLKRQRRPATYRSMAHY
              ::::::::       ::. :   .:..::       : ::.: : . ::...:
CCDS65  MARKVVSRKRKAPA-------SPGAG---SDAQGPQFGWDHSLHKRKRLPPVKRSLVYY
                10                  20        30        40         

           60        70           80        90       100       110 
pF1KB8 LKVREVGGWGPARLQG---FDGELRGYAVQRLPELLTERQLELGTVNKVFASQWLNSRQV
       :: :::      :::.   ..  :.:::.:.:: :: ::...:::.:::::::::: :::
CCDS65 LKNREV------RLQNETSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQV
      50              60        70        80        90       100   

             120       130       140       150       160       170 
pF1KB8 VCGTKCNTLFVVDVESGHIARIPLLRDSEARLAQDQQGCGIHAIELNPSKTLLATGGENP
       ::::::::::::::....:..::.:.: :   .  ::::::::::::::.:::::::.::
CCDS65 VCGTKCNTLFVVDVQTSQITKIPILKDREPG-GVTQQGCGIHAIELNPSRTLLATGGDNP
           110       120       130        140       150       160  

             180       190       200       210       220       230 
pF1KB8 NSLAIYQLPSLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDKFDDTV
       ::::::.::.:::.:.::  :::::::..::.:::.::::::::...::..  : .  . 
CCDS65 NSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSD
            170       180        190       200       210       220 

             240       250       260       270       280       290 
pF1KB8 AWHSEVGLPVYAHIRPRDVEAIPRAIINPSNRKVRALACGGKNQELGAVSLDGYFHLWKA
       : :.   .::::::  . .. ::.   ::.: :::::: ..::.::::::::::::::::
CCDS65 ARHNVSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKA
             230       240       250       260       270       280 

             300       310       320       330       340       350 
pF1KB8 GSALSRLLSIRLPYFRDNVCLTYCDDMSVYAVGSHSHVSFLDLRQDQQNIRPLCSREGGT
        ..::.::: .::: :.::::.: .. :::::::..:::::: :: . :.. .:::: :.
CCDS65 ENTLSKLLSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGS
             290       300       310       320       330       340 

             360       370       380       390       400       410 
pF1KB8 GVRSLSFYRHIITVGTGQGSLLFYDVRAQKFLEERASATLESSSGPARRKLRLACGRGWL
       :.::.:::.::::::::::::::::.:::.::::: ::   :.   : ..:.:. :.:::
CCDS65 GIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWL
             350       360       370       380       390       400 

             420       430       440       450       460   
pF1KB8 NHNDFWVNYFGGMEVFPNALYTHCYNWPEMKLFVAGGPLPAGLHGNYAGLWS
       ::.. : :::. .. ::::.:::::.    ::::::::::.:::::::::::
CCDS65 NHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS
             410       420       430       440       450   




463 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:00:20 2016 done: Fri Nov  4 16:00:21 2016
 Total Scan time:  3.000 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]