FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8841, 475 aa
  1>>>pF1KB8841 475 - 475 aa - 475 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6828+/-0.000924; mu= -0.5840+/- 0.056
 mean_var=266.3336+/-52.893, 0's: 0 Z-trim(114.8): 31  B-trim: 0 in 0/54
 Lambda= 0.078589
 statistics sampled from 15365 (15386) to 15365 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.473), width:  16
 Scan time:  3.800

The best scores are:                                      opt bits E(32554)
CCDS14440.1 ZCCHC5 gene_id:203430|Hs108|chrX       ( 475) 3273 384.1 1.8e-106


>>CCDS14440.1 ZCCHC5 gene_id:203430|Hs108|chrX            (475 aa)
 initn: 3273 init1: 3273 opt: 3273  Z-score: 2025.2  bits: 384.1 E(32554): 1.8e-106
Smith-Waterman score: 3273; 99.8% identity (99.8% similar) in 475 aa overlap (1-475:1-475)

               10        20        30        40        50        60
pF1KB8 MVEDLAASYIVLKLENEIRQAQVQWLMEENAALQAQIPELQKSQAAKEYDLLRKSSEAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVEDLAASYIVLKLENEIRQAQVQWLMEENAALQAQIPELQKSQAAKEYDLLRKSSEAKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PQKLPEHMNPPAAWEAQKTPEFKEPQKPPEPQDLLPWEPPAAWELQEAPAAPESLASPAT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS14 PQKLPEHMNPPAAWEAQKTPEFKEPQKPPEPQDLLPWEPPAAWELQEAPAAPESLAPPAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RESQKPPMAHEIPTVLEGQGPANTQDATIAQEPKNSEPQDPPNIEKPQEAPEYQETAAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RESQKPPMAHEIPTVLEGQGPANTQDATIAQEPKNSEPQDPPNIEKPQEAPEYQETAAQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 EFLELPPPQEPLEPSNAQEFLELSAAQESLEGLIVVETSAASEFPQAPIGLEATDFPLQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EFLELPPPQEPLEPSNAQEFLELSAAQESLEGLIVVETSAASEFPQAPIGLEATDFPLQY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TLTFSGDSQKLPEFLVQLYSYMRVRGHLYPTEAALVSFVGNCFSGRAGWWFQLLLDIQSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TLTFSGDSQKLPEFLVQLYSYMRVRGHLYPTEAALVSFVGNCFSGRAGWWFQLLLDIQSP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LLEQCESFIPVLQDTFDNPENMKDANQCIHQLCQGEGHVATHFHLIAQELNWDESTLWIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLEQCESFIPVLQDTFDNPENMKDANQCIHQLCQGEGHVATHFHLIAQELNWDESTLWIQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 FQEGLASSIQDELSHTSPATNLSDLITQCISLEEKPDPNPLGKSSSAEGDGPESPPAENQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FQEGLASSIQDELSHTSPATNLSDLITQCISLEEKPDPNPLGKSSSAEGDGPESPPAENQ
              370       380       390       400       410       420

              430       440       450       460       470     
pF1KB8 PMQAAINCPHISEAEWVRWHKGRLCLYCGYPGHFARDCPVKPHQALQAGNIQACQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PMQAAINCPHISEAEWVRWHKGRLCLYCGYPGHFARDCPVKPHQALQAGNIQACQ
              430       440       450       460       470     




475 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:02:15 2016 done: Fri Nov  4 16:02:16 2016
 Total Scan time:  3.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]