Result of FASTA (ccds) for
pF1KB8843
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8843, 496 aa
1>>>pF1KB8843 496 - 496 aa - 496 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.0770+/-0.000955; mu= -10.7388+/- 0.057
mean_var=447.8430+/-89.944, 0's: 0 Z-trim(117.8): 20 B-trim: 0 in 0/55
Lambda= 0.060605
statistics sampled from 18567 (18582) to 18567 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.571), width: 16
Scan time: 4.430
The best scores are: opt bits E(32554)
CCDS72874.1 ANKRD34A gene_id:284615|Hs108|chr1 ( 496) 3417 312.7 5.9e-85
CCDS53965.1 ANKRD34C gene_id:390616|Hs108|chr15 ( 535) 823 85.9 1.2e-16
CCDS34194.1 ANKRD34B gene_id:340120|Hs108|chr5 ( 514) 678 73.2 7.5e-13
>>CCDS72874.1 ANKRD34A gene_id:284615|Hs108|chr1 (496 aa)
initn: 3417 init1: 3417 opt: 3417 Z-score: 1638.7 bits: 312.7 E(32554): 5.9e-85
Smith-Waterman score: 3417; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)
10 20 30 40 50 60
pF1KB8 MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQNKARMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQNKARMV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RYLLEQGADPNIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGASALVHALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RYLLEQGADPNIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGASALVHALD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RGDRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPAPASPSPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RGDRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPAPASPSPGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEFPLPKPPDDPSPSEPLPKPPRHPPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEFPLPKPPDDPSPSEPLPKPPRHPPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PLKRLNSEPWGLVAPPQPVPPTEGRPGIERLTAEFNGLTLTGRPRLSRRHSTEGPEDPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PLKRLNSEPWGLVAPPQPVPPTEGRPGIERLTAEFNGLTLTGRPRLSRRHSTEGPEDPPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 WAEKVTSGGPLSRRNTAPEAQESGPPSGLRQKLSRMEPVELDTPGHLCPDSPESSRLSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 WAEKVTSGGPLSRRNTAPEAQESGPPSGLRQKLSRMEPVELDTPGHLCPDSPESSRLSLE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 RRRYSASPLTLPPAGSAPSPRQSQESLPGAVSPLSGRRRSPGLLERRGSGTLLLDHISQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RRRYSASPLTLPPAGSAPSPRQSQESLPGAVSPLSGRRRSPGLLERRGSGTLLLDHISQT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 RPGFLPPLNVSPHPPIPDIRPQPGGRAPSLPAPPYAGAPGSPRTKRKLVRRHSMQTEQIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RPGFLPPLNVSPHPPIPDIRPQPGGRAPSLPAPPYAGAPGSPRTKRKLVRRHSMQTEQIR
430 440 450 460 470 480
490
pF1KB8 LLGGFQSLGGPGEPGR
::::::::::::::::
CCDS72 LLGGFQSLGGPGEPGR
490
>>CCDS53965.1 ANKRD34C gene_id:390616|Hs108|chr15 (535 aa)
initn: 925 init1: 482 opt: 823 Z-score: 412.5 bits: 85.9 E(32554): 1.2e-16
Smith-Waterman score: 1205; 44.1% identity (65.3% similar) in 547 aa overlap (2-488:8-533)
10 20 30 40 50
pF1KB8 MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQ
:.:.:..::.:: :.:::.:::::::::.::.. .::::::.:: ... : :
CCDS53 MMDDDTELRTDGNSLLKAVWLGRLRLTRLLLEGGAYINESNDKGETALMVACITKHVDQQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 N--KARMVRYLLEQGADPNIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGA
. :..::.:::.. ::::: :. :.:::.::: .:. :.:::: .:::::..:..::
CCDS53 SISKSKMVKYLLDNRADPNIQDKSGKTALIHACIRRAGGEVVSLLLENGADPSLEDRTGA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 SALVHALDRGDRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPA
::::.:.. :...: ::::::::: :::::::: : :::: :.:::: :::: :::
CCDS53 SALVYAINADDKDALKHLLDACKAKGKEVIIITTDKSSSGTKTTKQYLNVPPSPKVED--
130 140 150 160 170
180 190 200 210 220
pF1KB8 PASPSPGFCTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEFPLPKPP--------DD
:: .:.:::.:.:.. : . :: ...:. : : . .: ..
CCDS53 --RHSPPLCASPSDIELKALG-----LDSPLTEKED---DFFSLQAGHPSSCNTSKAVNE
180 190 200 210 220
230 240 250 260 270
pF1KB8 P-SPSEPLPKPPRHPPKPLKRLNSEPWGLVAPPQPVPPTE-----GRPGIERLTAEFNGL
: ::.. . . : ::::.::::::.:: . :. : ... .. .
CCDS53 PGSPTRKVSNLKRARLPQLKRLQSEPWGLIAPSVLAASTRQDETHGASTDNEVIKSISDI
230 240 250 260 270 280
280 290 300 310
pF1KB8 TLTGRPRLSRRHSTEGPED------------------PPPWAEKVTSG-GP---LSRRNT
.. : ::: .: .. . : : .: .: :.::.:
CCDS53 SFPKRGPLSRTNSIDSKDPTLFHTVTEQVLKIPVSSAPASWKAAYEKGQAPHPRLARRGT
290 300 310 320 330 340
320 330 340 350 360
pF1KB8 APEAQES---GP--PSGLRQ--KLSRMEP--VELDT-PGHLCPDSP-----ESSRLSLER
: ::. :: ::.:.. .:. .: .:: :: :: : ::.. :.:
CCDS53 LPVDQEKCGMGPSGPSALKEPASLKWLENDLYDLDIQPG---PDPPNSISLESGKGPLDR
350 360 370 380 390 400
370 380 390 400 410 420
pF1KB8 RRYSASPLTLPPAGSAPSPRQSQESLPGAVSPLSGRRRSPGLLERRGSGTLLLDHISQTR
.. ..: :.: :: :.: ...: ..:: :.::: : :::::::::::::.::.::
CCDS53 KKLNSSHLSLFH-GS----RESLDTVP-STSPSSARRRPPHLLERRGSGTLLLDRISHTR
410 420 430 440 450
430 440 450 460 470
pF1KB8 PGFLPPLNVSPHPPIPDIRP--QPGGRAPSLPAPPYAGAPGSP-----RTKRKLVRRHSM
:::::::::. .::::::: .:. : ::.:: :.:.::.:::::
CCDS53 PGFLPPLNVNLNPPIPDIRSSSKPSCSLASGLKSMVPVAPSSPKRVDLRSKKKLLRRHSM
460 470 480 490 500 510
480 490
pF1KB8 QTEQIRLLGGFQSLGGPGEPGR
: ::.. :. :. .
CCDS53 QIEQMKQLSDFEEIMT
520 530
>>CCDS34194.1 ANKRD34B gene_id:340120|Hs108|chr5 (514 aa)
initn: 626 init1: 419 opt: 678 Z-score: 344.2 bits: 73.2 E(32554): 7.5e-13
Smith-Waterman score: 944; 40.0% identity (60.7% similar) in 535 aa overlap (2-485:7-514)
10 20 30 40 50
pF1KB8 MLHTEGHALLRAVGQGKLRLARLLLEGGAYVNEGDAQGETALMAACRARYDDPQN
. .::..:..:: :..:::.:::::::::.::.. .::: :: ::.... : :.
CCDS34 MDEGMEISSEGNSLIKAVHQSRLRLTRLLLEGGAYINESNDRGETPLMIACKTKHVDHQS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 --KARMVRYLLEQGADPNIADRLGRTALMHACAGGGGAAVASLLLAHGADPSVRDHAGAS
::.::.::::..::::: :. :.::::::: .: :.:::: ::: :..::.. :
CCDS34 VSKAKMVKYLLENNADPNIQDKSGKTALMHACLEKAGPEVVSLLLKSGADLSLQDHSSYS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 ALVHALDRGDRETLATLLDACKAKGTEVIIITTDTSPSGTKKTRQYLNSPPSPGVEDPAP
:::.:.. : ::: .::.:::::: ::::::: : : . :.:::: :: :.
CCDS34 ALVYAINSEDTETLKVLLSACKAKGKEVIIITTAKLPCGKHTTKQYLNMPP---VD--ID
130 140 150 160 170
180 190 200 210 220
pF1KB8 ASPSPGFCTSPSEIQLQTAGGGGRGMLSPRAQEEEEKRDVFEFP---LPKPPDDP-SPSE
. ::. ::.::::...::. :: .. : . .: : : :: .:.
CCDS34 GCHSPATCTTPSEIDIKTAS-------SPLSHSSETELTLFGFKDLELAGSNDDTWDPGS
180 190 200 210 220
230 240 250 260 270 280
pF1KB8 PLPKPPRHPPKPLKRLNSEPWGLVAPPQPVPPT------EGRPGI---ERLTAEFNGLTL
:. :: : : : .. :: . .:: . . : : :.:. . :::.:
CCDS34 PVRKPALAPKGP-KLPHAPPW-VKSPPLLMHQNRVASLQEELQDITPEEELSYKTNGLAL
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB8 TGRPRLSRRHSTEGPEDPPPWAEKVTSGGPLSRRNTAPEAQESGPPSGLRQKLSRMEPVE
. :. ::.. .: . ... ::. . : . .. : :. .. ::.
CCDS34 S--KRFITRHQSIDVKDTAHLLRAFDQAS--SRKMSYDEINCQSYLSEGNQQCIEV-PVD
290 300 310 320 330 340
350 360 370
pF1KB8 LDTPGHLCPDSPES---SRL-SLERRR------YSA-SPLT---LPPA---GSA------
: ::: .. : : :. ..: ::. : :. ::. :.:
CCDS34 QD------PDSNQTIFASTLRSIVQKRNLGANHYSSDSQLSAGLTPPTSEDGKALIGKKK
350 360 370 380 390
380 390 400 410 420 430
pF1KB8 ---PSPRQSQES--LPGAVSPLSGRRRSPGLLERRGSGTLLLDH-ISQTRPGFLPPLNVS
::: : .:: : . : ::. ..:::::::.. ::: ..::: ::::::::.
CCDS34 ILSPSPSQLSESKELLENIPPGPLSRRNHAVLERRGSGAFPLDHSVTQTRQGFLPPLNVN
400 410 420 430 440 450
440 450 460 470 480
pF1KB8 PHPPIPDIRPQPG-------GRAPSLPAPPYAGAPGSPRTKRKLVRRHSMQTEQIRLLGG
:::: :: . :. .:. : : ..:. :.::.:.:::::. : .
CCDS34 SHPPISDINVNNKICSLLSCGQKVLMPTVPI--FPKEFKSKKMLLRRQSLQTEQIKQLVN
460 470 480 490 500 510
490
pF1KB8 FQSLGGPGEPGR
:
CCDS34 F
496 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:03:22 2016 done: Fri Nov 4 16:03:23 2016
Total Scan time: 4.430 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]